Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   Q7612_RS00280 Genome accession   NZ_CP131722
Coordinates   56977..57660 (-) Length   227 a.a.
NCBI ID   WP_005648030.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018C09-260     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51977..62660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7612_RS00265 (Q7612_00265) nrdR 52767..53216 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  Q7612_RS00270 (Q7612_00270) recC 53271..56651 (-) 3381 WP_221253150.1 exodeoxyribonuclease V subunit gamma -
  Q7612_RS00275 (Q7612_00275) comQ 56697..56984 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  Q7612_RS00280 (Q7612_00280) comP 56977..57660 (-) 684 WP_005648030.1 DUF2572 family protein Machinery gene
  Q7612_RS00285 (Q7612_00285) comO 57675..58391 (-) 717 WP_005648032.1 type II secretion system protein J Machinery gene
  Q7612_RS00290 (Q7612_00290) comN 58391..58903 (-) 513 WP_005648034.1 type II secretion system protein Machinery gene
  Q7612_RS00295 (Q7612_00295) suhB 59103..59906 (+) 804 WP_032824502.1 inositol-1-monophosphatase -
  Q7612_RS00300 (Q7612_00300) nrfE 60015..61922 (+) 1908 WP_005666026.1 heme lyase NrfEFG subunit NrfE -
  Q7612_RS00305 (Q7612_00305) - 61922..62452 (+) 531 WP_005666027.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25406.29 Da        Isoelectric Point: 9.5163

>NTDB_id=864738 Q7612_RS00280 WP_005648030.1 56977..57660(-) (comP) [Haemophilus influenzae strain 2018C09-260]
MTIQKGIITLTILIFISGLLTVILLLDDSHLSFFRAQQNQRKHYVERTLQLQKMTATKKQTACLDLPLNNNESVKQISIA
LEGSTDAIQYFLWCERMSLFKKSPKKGDNQGALKDFVSGEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=864738 Q7612_RS00280 WP_005648030.1 56977..57660(-) (comP) [Haemophilus influenzae strain 2018C09-260]
ATGACAATACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAGCCATTTAAGTTTTTTTCGTGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACCGCGACGAAAAAACAAACTGCCTGCCTTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTTCCACCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCGCCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAGGTTGAAATTAATGGCACCGTA
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGAATTAGTGGCGCAGTGATTACCAGCGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

98.238

100

0.982