NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	WHO32_RS15075	Genome accession	NZ_CP148112
Coordinates	2835754..2836359 (-)	Length	201 a.a.
NCBI ID	WP_003229717.1	Uniprot ID	O05392
Organism	Bacillus subtilis isolate FELIX_MS504
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2830754..2841359

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHO32_RS15045	-	2831567..2831956 (+)	390	WP_004398667.1	TIGR04086 family membrane protein	-
WHO32_RS15050	yajC	2832013..2832279 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
WHO32_RS15055	tgt	2832316..2833461 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
WHO32_RS15060	queA	2833488..2834516 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
WHO32_RS15065	yrzS	2834546..2834746 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
WHO32_RS15070	ruvB	2834739..2835743 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
WHO32_RS15075	ruvA	2835754..2836359 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
WHO32_RS15080	bofC	2836498..2837010 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
WHO32_RS15085	csbX	2837058..2838365 (-)	1308	WP_003246197.1	MFS transporter	-
WHO32_RS15090	iolG	2838436..2839461 (-)	1026	WP_004398990.1	inositol 2-dehydrogenase	-
WHO32_RS15095	yrzF	2839699..2840346 (+)	648	WP_003246159.1	phosphotransferase	-
WHO32_RS15100	-	2840392..2840514 (-)	123	WP_003229707.1	hypothetical protein	-
WHO32_RS15105	yrzH	2840599..2840889 (+)	291	WP_003246047.1	DUF5412 family protein	-
WHO32_RS15110	-	2840896..2841036 (+)	141	WP_004398683.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22584.08 Da Isoelectric Point: 5.4072

                                >NTDB_id=864655 WHO32_RS15075 WP_003229717.1 2835754..2836359(-) (ruvA) [Bacillus subtilis isolate FELIX_MS504]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL

EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=864655 WHO32_RS15075 WP_003229717.1 2835754..2836359(-) (ruvA) [Bacillus subtilis isolate FELIX_MS504]

GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA

GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG

CTTTTTCGCTTTATGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG

AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT

GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC

CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT

GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC

AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408

Detailed information NTG0864655