Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | Q7615_RS03455 | Genome accession | NZ_CP131718 |
| Coordinates | 661158..661571 (+) | Length | 137 a.a. |
| NCBI ID | WP_011272047.1 | Uniprot ID | Q4QNA9 |
| Organism | Haemophilus influenzae strain 2016S11-301 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 656158..666571
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Q7615_RS03435 (Q7615_03440) | - | 656646..659240 (-) | 2595 | WP_011272051.1 | penicillin-binding protein 1A | - |
| Q7615_RS03440 (Q7615_03445) | comA | 659339..660136 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| Q7615_RS03445 (Q7615_03450) | comB | 660137..660643 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| Q7615_RS03450 (Q7615_03455) | comC | 660640..661161 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| Q7615_RS03455 (Q7615_03460) | comD | 661158..661571 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| Q7615_RS03460 (Q7615_03465) | comE | 661581..662918 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| Q7615_RS03465 (Q7615_03470) | - | 662931..663617 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| Q7615_RS03470 (Q7615_03475) | nfuA | 663693..664289 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| Q7615_RS03475 (Q7615_03480) | nudC | 664356..665150 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| Q7615_RS03480 (Q7615_03485) | - | 665186..665776 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| Q7615_RS03485 (Q7615_03490) | - | 665916..666188 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15695.85 Da Isoelectric Point: 4.5625
>NTDB_id=864645 Q7615_RS03455 WP_011272047.1 661158..661571(+) (comD) [Haemophilus influenzae strain 2016S11-301]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=864645 Q7615_RS03455 WP_011272047.1 661158..661571(+) (comD) [Haemophilus influenzae strain 2016S11-301]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comD | Haemophilus influenzae Rd KW20 |
99.27 |
100 |
0.993 |