Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   Q7617_RS09725 Genome accession   NZ_CP131716
Coordinates   1947243..1947590 (-) Length   115 a.a.
NCBI ID   WP_342121743.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016C10-304     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1942243..1952590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7617_RS09700 (Q7617_09695) otnI 1942710..1943486 (-) 777 WP_342121741.1 2-oxo-tetronate isomerase -
  Q7617_RS09705 (Q7617_09700) otnC 1943489..1944121 (-) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  Q7617_RS09710 (Q7617_09705) otnK 1944118..1945359 (-) 1242 WP_116945057.1 3-oxo-tetronate kinase -
  Q7617_RS09715 (Q7617_09710) ltnD 1945362..1946267 (-) 906 WP_015702001.1 L-threonate dehydrogenase -
  Q7617_RS09720 (Q7617_09715) - 1946438..1947196 (+) 759 WP_342121742.1 DeoR/GlpR family DNA-binding transcription regulator -
  Q7617_RS09725 (Q7617_09720) comE1/comEA 1947243..1947590 (-) 348 WP_342121743.1 helix-hairpin-helix domain-containing protein Machinery gene
  Q7617_RS09730 (Q7617_09725) ispH 1947759..1948703 (-) 945 WP_105899273.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q7617_RS09735 (Q7617_09730) lspA 1948700..1949215 (-) 516 WP_005651632.1 signal peptidase II -
  Q7617_RS09740 (Q7617_09735) - 1949285..1950844 (-) 1560 WP_342121744.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12393.26 Da        Isoelectric Point: 8.0085

>NTDB_id=864591 Q7617_RS09725 WP_342121743.1 1947243..1947590(-) (comE1/comEA) [Haemophilus influenzae strain 2016C10-304]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQPVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=864591 Q7617_RS09725 WP_342121743.1 1947243..1947590(-) (comE1/comEA) [Haemophilus influenzae strain 2016C10-304]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

96.429

97.391

0.939
  comEA/comE1 Glaesserella parasuis strain SC1401

59.649

99.13

0.591
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374