Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   Q7617_RS03270 Genome accession   NZ_CP131716
Coordinates   648199..648612 (+) Length   137 a.a.
NCBI ID   WP_005649303.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016C10-304     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 643199..653612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7617_RS03250 (Q7617_03250) - 643687..646281 (-) 2595 WP_342124557.1 penicillin-binding protein 1A -
  Q7617_RS03255 (Q7617_03255) comA 646380..647177 (+) 798 WP_005649306.1 pilus assembly protein PilM Machinery gene
  Q7617_RS03260 (Q7617_03260) comB 647178..647684 (+) 507 WP_005649305.1 competence protein ComB Machinery gene
  Q7617_RS03265 (Q7617_03265) comC 647681..648202 (+) 522 WP_005649304.1 competence protein ComC Machinery gene
  Q7617_RS03270 (Q7617_03270) comD 648199..648612 (+) 414 WP_005649303.1 pilus assembly protein PilP Machinery gene
  Q7617_RS03275 (Q7617_03275) comE 648622..649959 (+) 1338 WP_005649302.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7617_RS03280 (Q7617_03280) - 649972..650658 (+) 687 WP_005649301.1 ComF family protein -
  Q7617_RS03285 (Q7617_03285) nfuA 650734..651330 (+) 597 WP_116939827.1 Fe-S biogenesis protein NfuA -
  Q7617_RS03290 (Q7617_03290) nudC 651397..652191 (+) 795 WP_136429425.1 NAD(+) diphosphatase -
  Q7617_RS03295 (Q7617_03295) - 652227..652817 (+) 591 WP_116939830.1 YjaG family protein -
  Q7617_RS03300 (Q7617_03300) - 652958..653230 (+) 273 WP_005630954.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15700.86 Da        Isoelectric Point: 4.7132

>NTDB_id=864574 Q7617_RS03270 WP_005649303.1 648199..648612(+) (comD) [Haemophilus influenzae strain 2016C10-304]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADEHRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQVYSVLEGIDVAQEGYIVEKINQNNVQFIRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=864574 Q7617_RS03270 WP_005649303.1 648199..648612(+) (comD) [Haemophilus influenzae strain 2016C10-304]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAACATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCATTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATTCGTAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae Rd KW20

97.81

100

0.978
  comD Haemophilus influenzae 86-028NP

97.08

100

0.971