Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   Q7617_RS03255 Genome accession   NZ_CP131716
Coordinates   646380..647177 (+) Length   265 a.a.
NCBI ID   WP_005649306.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016C10-304     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 641380..652177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7617_RS03235 (Q7617_03235) recR 641549..642151 (-) 603 WP_005626527.1 recombination mediator RecR -
  Q7617_RS03240 (Q7617_03240) - 642284..642613 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  Q7617_RS03245 (Q7617_03245) - 642766..643611 (-) 846 WP_005686902.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  Q7617_RS03250 (Q7617_03250) - 643687..646281 (-) 2595 WP_342124557.1 penicillin-binding protein 1A -
  Q7617_RS03255 (Q7617_03255) comA 646380..647177 (+) 798 WP_005649306.1 pilus assembly protein PilM Machinery gene
  Q7617_RS03260 (Q7617_03260) comB 647178..647684 (+) 507 WP_005649305.1 competence protein ComB Machinery gene
  Q7617_RS03265 (Q7617_03265) comC 647681..648202 (+) 522 WP_005649304.1 competence protein ComC Machinery gene
  Q7617_RS03270 (Q7617_03270) comD 648199..648612 (+) 414 WP_005649303.1 pilus assembly protein PilP Machinery gene
  Q7617_RS03275 (Q7617_03275) comE 648622..649959 (+) 1338 WP_005649302.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7617_RS03280 (Q7617_03280) - 649972..650658 (+) 687 WP_005649301.1 ComF family protein -
  Q7617_RS03285 (Q7617_03285) nfuA 650734..651330 (+) 597 WP_116939827.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31541.90 Da        Isoelectric Point: 5.9495

>NTDB_id=864571 Q7617_RS03255 WP_005649306.1 646380..647177(+) (comA) [Haemophilus influenzae strain 2016C10-304]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRQSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=864571 Q7617_RS03255 WP_005649306.1 646380..647177(+) (comA) [Haemophilus influenzae strain 2016C10-304]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAGCAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTCAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

97.736

100

0.977
  comA Haemophilus influenzae 86-028NP

96.981

100

0.97