Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   Q7621_RS09980 Genome accession   NZ_CP131712
Coordinates   1995263..1995709 (-) Length   148 a.a.
NCBI ID   WP_001811371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2008C09-280     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1990263..2000709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7621_RS09950 (Q7621_09945) - 1990992..1991816 (-) 825 WP_341966576.1 membrane protein insertase YidC -
  Q7621_RS09955 (Q7621_09950) rnpA 1991791..1992162 (-) 372 WP_000739246.1 ribonuclease P protein component -
  Q7621_RS09960 (Q7621_09955) - 1992179..1992310 (-) 132 WP_000768904.1 hypothetical protein -
  Q7621_RS09965 (Q7621_09960) - 1992311..1993501 (-) 1191 WP_000167766.1 acetate kinase -
  Q7621_RS09970 (Q7621_09965) comYH 1993552..1994505 (-) 954 WP_000345133.1 class I SAM-dependent methyltransferase Machinery gene
  Q7621_RS09975 (Q7621_09970) - 1994566..1995160 (-) 595 Protein_1940 methyltransferase domain-containing protein -
  Q7621_RS09980 (Q7621_09975) comGG/cglG 1995263..1995709 (-) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  Q7621_RS09985 (Q7621_09980) comGF/cglF 1995687..1996148 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q7621_RS09990 (Q7621_09985) comGE/cglE 1996111..1996413 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  Q7621_RS09995 (Q7621_09990) comGD/cglD 1996376..1996780 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q7621_RS10000 (Q7621_09995) comGC/cglC 1996773..1997099 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  Q7621_RS10005 (Q7621_10000) comGB/cglB 1997101..1998117 (-) 1017 WP_078134418.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q7621_RS10010 (Q7621_10005) comGA/cglA/cilD 1998065..1999006 (-) 942 WP_000249573.1 competence type IV pilus ATPase ComGA Machinery gene
  Q7621_RS10015 (Q7621_10010) - 1999082..1999447 (-) 366 WP_000286415.1 DUF1033 family protein -
  Q7621_RS10020 (Q7621_10015) - 1999598..2000656 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 148 a.a.        Molecular weight: 17229.91 Da        Isoelectric Point: 10.5573

>NTDB_id=864298 Q7621_RS09980 WP_001811371.1 1995263..1995709(-) (comGG/cglG) [Streptococcus pneumoniae strain 2008C09-280]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQIAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKNQKRSLKRKRIPSQFNYNALNPE

Nucleotide


Download         Length: 447 bp        

>NTDB_id=864298 Q7621_RS09980 WP_001811371.1 1995263..1995709(-) (comGG/cglG) [Streptococcus pneumoniae strain 2008C09-280]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAATCGCCCACTATCAAGACTATGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGCGGAGAAAAAAAATCAGAAGAGAAGCCTGAAAAGAA
AGAGAATTCCTAGTCAATTCAACTATAATGCGTTGAATCCAGAATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae D39

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae R6

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

79.054

0.75

  comGG/cglG Streptococcus mitis NCTC 12261

89.344

82.432

0.736

  comGG/cglG Streptococcus mitis SK321

86.066

82.432

0.709