Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   Q7625_RS10025 Genome accession   NZ_CP131708
Coordinates   1959487..1959933 (-) Length   148 a.a.
NCBI ID   WP_001811371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2016C10-332     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1954487..1964933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7625_RS09995 (Q7625_09980) - 1955216..1956040 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  Q7625_RS10000 (Q7625_09985) rnpA 1956015..1956386 (-) 372 WP_000739246.1 ribonuclease P protein component -
  Q7625_RS10005 (Q7625_09990) - 1956403..1956534 (-) 132 WP_000768904.1 hypothetical protein -
  Q7625_RS10010 (Q7625_09995) - 1956535..1957725 (-) 1191 WP_000167766.1 acetate kinase -
  Q7625_RS10015 (Q7625_10000) comYH 1957776..1958729 (-) 954 WP_000345133.1 class I SAM-dependent methyltransferase Machinery gene
  Q7625_RS10020 (Q7625_10005) - 1958790..1959384 (-) 595 Protein_1949 methyltransferase domain-containing protein -
  Q7625_RS10025 (Q7625_10010) comGG/cglG 1959487..1959933 (-) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  Q7625_RS10030 (Q7625_10015) comGF/cglF 1959911..1960372 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  Q7625_RS10035 (Q7625_10020) comGE/cglE 1960335..1960637 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  Q7625_RS10040 (Q7625_10025) comGD/cglD 1960600..1961004 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q7625_RS10045 (Q7625_10030) comGC/cglC 1960997..1961323 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  Q7625_RS10050 (Q7625_10035) comGB/cglB 1961325..1962341 (-) 1017 WP_078134418.1 competence type IV pilus assembly protein ComGB Machinery gene
  Q7625_RS10055 (Q7625_10040) comGA/cglA/cilD 1962289..1963230 (-) 942 WP_000249573.1 competence type IV pilus ATPase ComGA Machinery gene
  Q7625_RS10060 (Q7625_10045) - 1963306..1963671 (-) 366 WP_000286415.1 DUF1033 family protein -
  Q7625_RS10065 (Q7625_10050) - 1963822..1964880 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 148 a.a.        Molecular weight: 17229.91 Da        Isoelectric Point: 10.5573

>NTDB_id=863991 Q7625_RS10025 WP_001811371.1 1959487..1959933(-) (comGG/cglG) [Streptococcus pneumoniae strain 2016C10-332]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQIAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKNQKRSLKRKRIPSQFNYNALNPE

Nucleotide


Download         Length: 447 bp        

>NTDB_id=863991 Q7625_RS10025 WP_001811371.1 1959487..1959933(-) (comGG/cglG) [Streptococcus pneumoniae strain 2016C10-332]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAATCGCCCACTATCAAGACTATGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGCGGAGAAAAAAAATCAGAAGAGAAGCCTGAAAAGAA
AGAGAATTCCTAGTCAATTCAACTATAATGCGTTGAATCCAGAATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae D39

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae R6

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

79.054

0.75

  comGG/cglG Streptococcus mitis NCTC 12261

89.344

82.432

0.736

  comGG/cglG Streptococcus mitis SK321

86.066

82.432

0.709