Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   WGK56_RS05390 Genome accession   NZ_CP148001
Coordinates   1068926..1071007 (+) Length   693 a.a.
NCBI ID   WP_015702516.1    Uniprot ID   -
Organism   Haemophilus influenzae strain AR2632     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1063926..1076007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WGK56_RS05370 (WGK56_05365) gap 1064517..1065536 (-) 1020 WP_014326504.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  WGK56_RS05375 (WGK56_05370) gmk 1065787..1066413 (+) 627 WP_005693898.1 guanylate kinase -
  WGK56_RS05380 (WGK56_05375) rpoZ 1066476..1066742 (+) 267 WP_005671705.1 DNA-directed RNA polymerase subunit omega -
  WGK56_RS05385 (WGK56_05380) spoT 1066815..1068929 (+) 2115 WP_015702517.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  WGK56_RS05390 (WGK56_05385) recG 1068926..1071007 (+) 2082 WP_015702516.1 ATP-dependent DNA helicase RecG Machinery gene
  WGK56_RS05395 (WGK56_05390) murI 1071037..1071846 (+) 810 WP_015702515.1 glutamate racemase -
  WGK56_RS05400 (WGK56_05395) lldD 1072058..1073203 (+) 1146 WP_005649913.1 FMN-dependent L-lactate dehydrogenase LldD -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77988.59 Da        Isoelectric Point: 8.0963

>NTDB_id=863540 WGK56_RS05390 WP_015702516.1 1068926..1071007(+) (recG) [Haemophilus influenzae strain AR2632]
MSLELLDAVPLTSISGVGAAISNKLAKIGIQNLQDLLFHLPIRYEDRTRITPIANLRPEQYFTIEGIVQTCEVAFGRRPI
LSVSLSDGTSKIMLRFFNFNAGMRNSFQAGVRVKAFGEVKRGRHMPEIHHPEYQIVRDNAPIVLEETLTPIYPTTEGLKQ
NSLRKLTDQALALLDKVQIAEILPNEFNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQLRLIFEELLAHNLAMQKVR
LGTQQFSALPLHYQTDLKLRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQV
ALMAPTEILAEQHANNFRRWFEPFGIEVGWLAGKVKGKSRQAELEKIKTGTVQMVVGTHALFQEEVEFSDLALVIIDEQH
RFGVHQRLMLREKGEKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACV
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSQKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQ
TGIAELRIANLMRDRKMIPTVQHYAKSLIQKYPDVAESLICRWLNNKEIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=863540 WGK56_RS05390 WP_015702516.1 1068926..1071007(+) (recG) [Haemophilus influenzae strain AR2632]
ATGAGCCTTGAACTTCTCGATGCCGTGCCTTTGACCAGCATTTCTGGTGTGGGGGCTGCCATTTCTAATAAACTGGCTAA
AATCGGCATTCAGAACCTGCAAGATTTACTCTTTCATTTACCTATTCGCTATGAAGATCGTACGCGAATTACGCCAATCG
CTAATCTTCGCCCTGAACAATATTTTACTATAGAGGGAATTGTACAAACCTGTGAAGTCGCTTTTGGCCGCCGCCCGATT
TTATCGGTAAGTTTGTCAGACGGCACATCGAAAATTATGTTACGTTTTTTCAATTTTAATGCGGGAATGCGTAATAGTTT
TCAAGCAGGTGTGCGAGTAAAGGCTTTTGGCGAAGTGAAACGTGGGCGTCACATGCCAGAAATTCATCATCCAGAATATC
AAATTGTGCGAGATAATGCACCCATAGTATTGGAAGAAACCCTAACGCCGATTTATCCCACAACGGAAGGGTTAAAACAA
AATTCATTACGAAAATTAACGGATCAGGCTTTGGCATTACTCGACAAAGTTCAGATTGCAGAAATTTTGCCTAATGAATT
TAATCCACATCAATATAGCTTAAAAGAGGCATTGCGATTATTGCATCGTCCGCCGCCAGATATTTCATTAGAAATGTTAG
AGCAAGGTAAGCATCCTGCACAACTACGATTAATTTTTGAAGAGCTTCTGGCACATAATTTAGCTATGCAAAAAGTGCGG
TTAGGAACGCAACAATTTTCTGCCTTACCGCTACATTATCAAACAGATTTGAAACTGCGATTTTTAGCCACCTTACCATT
TCAACCAACTAATGCGCAAAAGCGAGTAGTGTCCGATATTGAACAAGATCTTATCAAAGATTATCCGATGATGCGCTTAG
TGCAAGGGGATGTAGGCTCGGGAAAAACATTGGTTGCCGCATTGGCTGCTTTAACTGCAATTGATAATGGTAAACAAGTC
GCCTTAATGGCGCCAACAGAAATTCTTGCAGAACAGCATGCGAATAATTTTAGACGGTGGTTTGAGCCTTTCGGTATTGA
AGTTGGCTGGTTGGCAGGTAAAGTAAAAGGAAAATCAAGACAAGCAGAGCTTGAAAAAATTAAAACTGGCACGGTGCAAA
TGGTGGTGGGGACGCATGCTTTATTCCAAGAAGAAGTCGAGTTTTCCGACTTAGCATTAGTGATTATTGATGAACAACAT
CGTTTTGGGGTGCATCAACGATTAATGTTGCGTGAAAAAGGCGAAAAAGCGGGATTTTATCCCCATCAGTTAATTATGAC
GGCCACGCCGATTCCGAGAACGTTGGCAATGACCGTATATGCAGATTTGGATACATCAATTATTGATGAATTGCCTCCAG
GTCGTACGCCGATAACAACCGTAGTGGTTTCTGAAGAACGTCGAGCTGAAATTGTGATGCGTGTAAAAAACGCTTGTGTT
AATGAAAAACGTCAAGCCTATTGGGTGTGTACGTTAATTGATGAATCAGAGGTGTTAGAAGCTCAAGCAGCTGAAGCGAT
TTGGGAAGATTTAACGAAAGCGTTACCGATGTTAAATATTGGTTTAGTGCACGGGCGCATGAAACCCCAAGAAAAGCAAG
ATGTCATGATGCGTTTTAAAAATGCAGAATTGGATTTATTGGTGGCAACGACAGTCATCGAAGTGGGGGTTGATGTGCCT
AATGCGAGTTTGATGATTATCGAAAATGCAGAACGTTTAGGTTTATCGCAGCTTCATCAGTTACGAGGGCGCGTCGGTCG
AGGCAGTACGGCTTCTTTTTGTGTACTAATGTATAAACCTCCGCTAGGTAAAGTTTCGCAAAAGCGTTTGCAAGTGCTAA
GAGATAGCCAAGATGGGTTTGTTATTTCGGAAAAAGATTTAGAAATTCGTGGGCCAGGTGAAGTACTTGGAACGAAACAA
ACGGGAATTGCTGAATTGCGAATAGCAAATTTAATGCGAGATAGAAAAATGATACCAACGGTGCAACATTATGCGAAATC
ACTTATCCAAAAATACCCTGATGTGGCAGAAAGCCTAATCTGTCGCTGGCTCAATAATAAAGAAATTTACTCGAACGCTT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(273-405)

RecG wedge domain (RecG_wedge)

(14-172)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

48.563

100

0.488
  recG/mmsA Streptococcus pneumoniae R6

38.329

100

0.384
  recG/mmsA Streptococcus pneumoniae R36A

38.329

100

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

38.955

96.681

0.377