Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   WAE38_RS11885 Genome accession   NZ_CP147984
Coordinates   2376448..2378529 (-) Length   693 a.a.
NCBI ID   WP_035496543.1    Uniprot ID   -
Organism   Glaesserella parasuis strain H16SD2BY4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2371448..2383529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAE38_RS11865 (WAE38_11865) rbsK 2371945..2372868 (+) 924 WP_021114380.1 ribokinase -
  WAE38_RS11870 (WAE38_11870) glnA 2373188..2374615 (+) 1428 WP_021114381.1 type I glutamate--ammonia ligase -
  WAE38_RS11875 (WAE38_11875) - 2374682..2375651 (-) 970 Protein_2293 IS256 family transposase -
  WAE38_RS11880 (WAE38_11880) - 2375757..2376164 (-) 408 WP_021114316.1 NirD/YgiW/YdeI family stress tolerance protein -
  WAE38_RS11885 (WAE38_11885) recG 2376448..2378529 (-) 2082 WP_035496543.1 ATP-dependent DNA helicase RecG Machinery gene
  WAE38_RS11890 (WAE38_11890) - 2378642..2379847 (-) 1206 WP_160413964.1 cupin domain-containing protein -
  WAE38_RS11895 (WAE38_11895) - 2379948..2380712 (-) 765 WP_207342755.1 BPL-N domain-containing protein -
  WAE38_RS11900 (WAE38_11900) - 2380796..2381362 (+) 567 WP_021112882.1 biotin transporter BioY -
  WAE38_RS11905 (WAE38_11905) - 2381493..2382302 (-) 810 WP_021112890.1 Cof-type HAD-IIB family hydrolase -
  WAE38_RS11910 (WAE38_11910) - 2382426..2383103 (+) 678 WP_021115350.1 phosphoribosyltransferase family protein -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77239.41 Da        Isoelectric Point: 8.3399

>NTDB_id=863493 WAE38_RS11885 WP_035496543.1 2376448..2378529(-) (recG) [Glaesserella parasuis strain H16SD2BY4]
MSQQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRYEDRTRITPIADVRPESFATVEGFVQLTEVQFGRRPI
LSTTISDGTSKITLKFFNFNAGMKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQ
ASLRKLTDQALALLERVQVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQQVR
MGVQQHFAEPLCYQTDLKQRFLATLPFQPTNAQSRVTAEIEQDLAKPFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQH
RFGVHQRLTLREKGAKGDVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQCALPDLRIGLVHGRMKPQEKQAIMAEFKAANIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYKAPLGKISSKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQ
TGMAEFKIANLMRDRKMIPLVQNYAKQLTLKYPDTAKQLIRRWLDEKTVYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=863493 WAE38_RS11885 WP_035496543.1 2376448..2378529(-) (recG) [Glaesserella parasuis strain H16SD2BY4]
ATGAGCCAACAACTATTAGACGGTGTACCGCTAACCGCCCTTTCGGGTGTTGGGGCGGCGATTTCAGAGAAACTCAGTCG
GATCGGCATTAATAATGTGCAAGATCTGCTGTTCCATTTGCCTATGCGCTATGAAGACCGTACTCGGATCACGCCGATTG
CGGATGTTCGTCCTGAAAGTTTTGCGACGGTTGAAGGCTTTGTGCAACTGACGGAAGTGCAATTTGGTCGTCGTCCGATT
TTAAGTACCACAATTTCTGACGGCACAAGCAAAATTACCCTGAAATTCTTTAATTTCAATGCGGGAATGAAAAATAGTCT
GGCAACTGGCGTAAGAGTGAAAGCCTTTGGCGAGATTAAACGTGGTCGCTTTATGGCAGAAATTCATCACCCTGAATATC
AAATTATTCGGGGAAATCAACCGCTTGAGCTGGCAGAAACATTAACACCGATTTACCCGACAACCGAAGGCTTGAAGCAA
GCCTCTTTGCGTAAATTAACCGATCAAGCCTTAGCGTTACTTGAGCGTGTGCAAGTGGCAGAATTGCTTCCTGATGAATT
TAATCCACACAAATATAGCTTAAAAGAAGCCTTGCAGTTGTTACATCGACCGCCACCGAGTGTGTCGTCCGAATTGTTAG
ATAAAGGCGAACACCCTGCACAAAAACGGCTGATTTTTGAAGAGCTGTTGGCTCATAATTTGGCGATGCAACAGGTGCGA
ATGGGGGTGCAACAACATTTTGCTGAACCGCTATGTTATCAAACCGATTTAAAACAACGCTTTTTAGCCACTTTGCCGTT
TCAACCGACCAACGCTCAAAGCCGTGTGACTGCGGAGATTGAACAGGATTTGGCAAAACCTTTTCCGATGATGCGACTGG
TGCAAGGCGATGTGGGTTCAGGCAAAACCCTTGTGGCTGCGTTAGCGGCACTGTTGGCGATTGATAATGGTAAACAGGTG
GCGTTAATGGCACCGACCGAAATTCTCGCCGAGCAACACGCTCACAATTTTGCCAACTGGTTGCGACCTTTTGGGATCGA
AGTGGGCTGGTTAGCTGGCAAAGTGAAAGGTAAAGCGAGAACAGCTCAGTTGGAAGCGATTAAAAACGGCGATGTTCAGA
TGATTATCGGCACGCACGCCCTGTTTCAAGATCAGGTGGAATTTCATCATCTTGCTCTTGTGATTATTGATGAACAGCAC
CGCTTTGGTGTACATCAGCGTTTAACCCTACGCGAGAAAGGGGCTAAGGGCGATGTCTATCCGCACCAGTTGATTATGAC
CGCAACGCCTATTCCACGCACCTTGGCGATGACCGTCTATGCGGATTTGGATACGTCCATTATTGACGAACTTCCCCCTG
GACGAACACCGATCACGACGGTGGCGATTTCGGAAGATCGCCGAGATGAAGTGGTTCGCCGTGTTTATCAAGCCTGTAAA
AATGAAAAACGCCAAGCCTATTGGGTCTGTACGCTAATTGATGAGTCGGAAGTGTTAGAAGCACAAGCGGCGGCAGCCAT
TGCAGAAGATTTGCAATGTGCTTTGCCAGATTTGCGGATTGGGTTGGTTCACGGGCGAATGAAGCCACAGGAAAAACAGG
CAATTATGGCGGAATTTAAGGCGGCAAATATTGATTTGTTGGTGGCAACAACAGTGATCGAAGTCGGCGTAGATGTGCCG
AATGCCAGTTTGATGATTATCGAAAATTCCGAACGCTTGGGATTGGCACAGTTGCACCAACTGCGTGGGCGTGTTGGACG
TGGAGCGACGGCTTCCCATTGTGTCTTGATGTACAAAGCCCCATTGGGTAAAATTTCATCTAAACGGTTACAGGTACTGA
GAGATAGCCAAGACGGTTTTGTGATTGCTGAAAAAGATTTGGAAATTCGTGGCCCGGGTGAAGTGTTAGGCACAAAACAG
ACAGGTATGGCGGAGTTCAAAATTGCGAATTTAATGCGAGATCGCAAGATGATCCCATTGGTGCAGAACTACGCCAAACA
GCTAACGTTAAAATATCCTGATACGGCTAAACAGCTAATTCGCCGTTGGCTTGATGAAAAGACGGTTTATAGTAATGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(16-172)

DEAD/DEAH box helicase (DEAD)

(293-407)

Helicase conserved C-terminal domain (Helicase_C)

(475-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.185

97.403

0.479
  recG Bacillus subtilis subsp. subtilis str. 168

39.794

98.268

0.391
  recG/mmsA Streptococcus pneumoniae R6

39.482

94.661

0.374
  recG/mmsA Streptococcus pneumoniae R36A

39.482

94.661

0.374