Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WAE38_RS11685 Genome accession   NZ_CP147984
Coordinates   2332170..2332811 (+) Length   213 a.a.
NCBI ID   WP_021111957.1    Uniprot ID   -
Organism   Glaesserella parasuis strain H16SD2BY4     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2327170..2337811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAE38_RS11660 (WAE38_11660) - 2327219..2328253 (-) 1035 WP_021111404.1 methionine synthase -
  WAE38_RS11665 (WAE38_11665) - 2328276..2329253 (-) 978 WP_261480742.1 DUF1852 domain-containing protein -
  WAE38_RS11670 (WAE38_11670) ffh 2329560..2330942 (+) 1383 WP_010786427.1 signal recognition particle protein -
  WAE38_RS11680 (WAE38_11680) - 2331217..2331905 (+) 689 Protein_2254 ISAs1 family transposase -
  WAE38_RS11685 (WAE38_11685) sxy/tfoX 2332170..2332811 (+) 642 WP_021111957.1 TfoX/Sxy family DNA transformation protein Regulator
  WAE38_RS11690 (WAE38_11690) fumC 2332959..2334353 (+) 1395 WP_021113234.1 class II fumarate hydratase -
  WAE38_RS11695 (WAE38_11695) - 2334535..2335713 (+) 1179 WP_015939850.1 ATP-grasp domain-containing protein -
  WAE38_RS11700 (WAE38_11700) - 2335848..2336606 (+) 759 WP_021112874.1 alpha/beta hydrolase-fold protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24775.77 Da        Isoelectric Point: 9.7347

>NTDB_id=863489 WAE38_RS11685 WP_021111957.1 2332170..2332811(+) (sxy/tfoX) [Glaesserella parasuis strain H16SD2BY4]
MKYIDVKTQHIRNLLYPIIGETQAKTYFSYYGIMKDGALFALYKNSKFYLHISGNCLHEVLTNPNISQLSDSKYGINSKS
FYLIPTEILYDLKPISHWITNGIQEIINTKHTQYIKKKRCIRTLPNMTIQLERTLKKLGINSIDELIDRGEVDIFVNLLK
MGIDADQAILFRLYGAINRQYIYTISDKTKQDLLNDANHALYEAGLRKRFNVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=863489 WAE38_RS11685 WP_021111957.1 2332170..2332811(+) (sxy/tfoX) [Glaesserella parasuis strain H16SD2BY4]
ATGAAATACATTGATGTAAAAACACAACACATTAGAAATTTGCTTTATCCTATAATTGGAGAAACTCAAGCAAAAACATA
TTTTTCCTACTATGGAATAATGAAAGATGGAGCTCTGTTTGCTCTATATAAAAATAGTAAATTCTATCTTCATATCTCAG
GAAACTGTCTACATGAAGTACTAACTAATCCCAATATATCCCAACTGTCCGACTCTAAATATGGTATCAATTCTAAATCT
TTCTATTTGATTCCAACAGAAATTTTATATGATTTAAAACCCATCTCCCATTGGATAACCAATGGTATTCAAGAGATTAT
AAATACAAAACACACCCAATATATAAAAAAGAAAAGATGTATCCGTACCTTACCTAATATGACTATTCAACTAGAAAGGA
CATTGAAAAAGTTAGGTATCAACTCCATCGATGAACTGATTGATAGAGGTGAAGTGGATATATTCGTTAATCTTCTTAAG
ATGGGTATAGATGCTGATCAAGCTATTTTGTTCCGTCTTTATGGAGCAATTAATCGACAATATATTTATACTATCTCTGA
TAAGACTAAGCAGGATCTACTTAATGATGCAAATCATGCTCTATATGAGGCTGGCTTACGTAAGCGCTTCAATGTTAAAT
AA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(120-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

100

100

1
  sxy/tfoX Actinobacillus suis H91-0380

41.429

98.592

0.408
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

39.234

98.122

0.385