Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | CPY3401_RS00750 | Genome accession | NZ_AP024599 |
| Coordinates | 158228..159364 (+) | Length | 378 a.a. |
| NCBI ID | WP_221062572.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 3401 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 153228..164364
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPY3401_RS00715 (CPY3401_01420) | panD | 153680..154030 (+) | 351 | WP_180440147.1 | aspartate 1-decarboxylase | - |
| CPY3401_RS00720 (CPY3401_01430) | - | 154041..154334 (+) | 294 | WP_000347916.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CPY3401_RS00725 (CPY3401_01440) | - | 154334..155329 (+) | 996 | WP_221062863.1 | PDZ domain-containing protein | - |
| CPY3401_RS00730 (CPY3401_01450) | comB6 | 155337..156392 (+) | 1056 | WP_221062862.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| CPY3401_RS00735 | comB7 | 156408..156533 (+) | 126 | WP_120902658.1 | comB7 lipoprotein | Machinery gene |
| CPY3401_RS00740 (CPY3401_01460) | comB8 | 156530..157273 (+) | 744 | WP_221062570.1 | type IV secretion system protein | Machinery gene |
| CPY3401_RS00745 (CPY3401_01470) | comB9 | 157273..158235 (+) | 963 | WP_221062571.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| CPY3401_RS00750 (CPY3401_01480) | comB10 | 158228..159364 (+) | 1137 | WP_221062572.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| CPY3401_RS00755 (CPY3401_01490) | - | 159430..160842 (+) | 1413 | WP_221062573.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| CPY3401_RS00760 (CPY3401_01500) | gmd | 160856..162001 (+) | 1146 | WP_221062574.1 | GDP-mannose 4,6-dehydratase | - |
| CPY3401_RS00765 (CPY3401_01510) | - | 161994..162926 (+) | 933 | WP_221062575.1 | GDP-L-fucose synthase family protein | - |
| CPY3401_RS00770 (CPY3401_01520) | hypE | 163175..164173 (-) | 999 | WP_221062576.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42086.66 Da Isoelectric Point: 9.8461
>NTDB_id=86329 CPY3401_RS00750 WP_221062572.1 158228..159364(+) (comB10) [Helicobacter pylori strain 3401]
MNKWIKGVLVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWIKGVLVFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=86329 CPY3401_RS00750 WP_221062572.1 158228..159364(+) (comB10) [Helicobacter pylori strain 3401]
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACCCAAAACCCACAGCCAACTAATACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACCCAAAACCCACAGCCAACTAATACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.032 |
100 |
0.96 |