Detailed information NTG0086328

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CPY3401_RS00745
• Genome accession: NZ_AP024599
• Coordinates: 157273..158235 (+)
• Length: 320 a.a.
• NCBI ID: WP_221062571.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 3401
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 152273..163235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CPY3401_RS00715 (CPY3401_01420)	panD	153680..154030 (+)	351	WP_180440147.1	aspartate 1-decarboxylase	-
CPY3401_RS00720 (CPY3401_01430)	-	154041..154334 (+)	294	WP_000347916.1	YbaB/EbfC family nucleoid-associated protein	-
CPY3401_RS00725 (CPY3401_01440)	-	154334..155329 (+)	996	WP_221062863.1	PDZ domain-containing protein	-
CPY3401_RS00730 (CPY3401_01450)	comB6	155337..156392 (+)	1056	WP_221062862.1	P-type conjugative transfer protein TrbL	Machinery gene
CPY3401_RS00735	comB7	156408..156533 (+)	126	WP_120902658.1	comB7 lipoprotein	Machinery gene
CPY3401_RS00740 (CPY3401_01460)	comB8	156530..157273 (+)	744	WP_221062570.1	type IV secretion system protein	Machinery gene
CPY3401_RS00745 (CPY3401_01470)	comB9	157273..158235 (+)	963	WP_221062571.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CPY3401_RS00750 (CPY3401_01480)	comB10	158228..159364 (+)	1137	WP_221062572.1	DNA type IV secretion system protein ComB10	Machinery gene
CPY3401_RS00755 (CPY3401_01490)	-	159430..160842 (+)	1413	WP_221062573.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CPY3401_RS00760 (CPY3401_01500)	gmd	160856..162001 (+)	1146	WP_221062574.1	GDP-mannose 4,6-dehydratase	-
CPY3401_RS00765 (CPY3401_01510)	-	161994..162926 (+)	933	WP_221062575.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 37001.61 Da
• Isoelectric Point: 9.2034

>NTDB_id=86328 CPY3401_RS00745 WP_221062571.1 157273..158235(+) (comB9) [Helicobacter pylori strain 3401]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKDYRALKSSQRKWYCLWICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=86328 CPY3401_RS00745 WP_221062571.1 157273..158235(+) (comB9) [Helicobacter pylori strain 3401]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTAGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCTATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAATTCAAGAAAATACCCTTGAAAAGGCTCCAACAAACAATAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGACTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGCTTGTGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.025	100	0.938