Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   Q7644_RS02385 Genome accession   NZ_CP131645
Coordinates   449455..449928 (+) Length   157 a.a.
NCBI ID   WP_012503482.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2004S05-027     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444455..454928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7644_RS02360 (Q7644_02370) dnaB 444885..446291 (+) 1407 WP_050162865.1 replicative DNA helicase -
  Q7644_RS02365 (Q7644_02375) pilH 446599..447261 (+) 663 WP_341931137.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7644_RS02370 (Q7644_02380) pilI 447293..447907 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  Q7644_RS02375 (Q7644_02385) pilJ 447904..448863 (+) 960 WP_050169726.1 PilW family protein Machinery gene
  Q7644_RS02380 (Q7644_02390) pilK 448842..449453 (+) 612 WP_012503481.1 pilus assembly protein Machinery gene
  Q7644_RS02385 (Q7644_02395) pilL 449455..449928 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7644_RS02390 (Q7644_02400) - 449998..450306 (-) 309 WP_003706588.1 AzlD family protein -
  Q7644_RS02395 (Q7644_02405) - 450303..451014 (-) 712 Protein_467 AzlC family ABC transporter permease -
  Q7644_RS02400 (Q7644_02410) dut 451180..451632 (+) 453 WP_003701071.1 dUTP diphosphatase -
  Q7644_RS02405 (Q7644_02415) dapC 451704..452891 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  Q7644_RS02410 (Q7644_02420) yaaA 453047..453826 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17486.30 Da        Isoelectric Point: 9.9561

>NTDB_id=863215 Q7644_RS02385 WP_012503482.1 449455..449928(+) (pilL) [Neisseria gonorrhoeae strain 2004S05-027]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDNNQIIKSKLETFVLGYKM
NPKIAKKYSVSVAFANTEKPRAYRLVGVPKAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=863215 Q7644_RS02385 WP_012503482.1 449455..449928(+) (pilL) [Neisseria gonorrhoeae strain 2004S05-027]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACAATAATCAGATCATCAAGAGCAAACTGGAAACATTTGTCTTAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGGCATTTGCCAATACGGAAAAACCAAGGGCATACAGGTTGGTCGG
CGTTCCGAAGGCAGGGACGGGTTATACCTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

91.72

100

0.917
  pilX Neisseria meningitidis 8013

85.35

100

0.854