Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q7644_RS02365 Genome accession   NZ_CP131645
Coordinates   446599..447261 (+) Length   220 a.a.
NCBI ID   WP_341931137.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2004S05-027     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441599..452261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7644_RS02340 (Q7644_02350) cysT 441719..442557 (-) 839 Protein_456 sulfate ABC transporter permease subunit CysT -
  Q7644_RS02345 (Q7644_02355) - 442743..443075 (+) 333 WP_003687908.1 hypothetical protein -
  Q7644_RS02350 (Q7644_02360) - 443402..443911 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q7644_RS02355 (Q7644_02365) - 444141..444722 (-) 582 WP_003698180.1 superoxide dismutase -
  Q7644_RS02360 (Q7644_02370) dnaB 444885..446291 (+) 1407 WP_050162865.1 replicative DNA helicase -
  Q7644_RS02365 (Q7644_02375) pilH 446599..447261 (+) 663 WP_341931137.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7644_RS02370 (Q7644_02380) pilI 447293..447907 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  Q7644_RS02375 (Q7644_02385) pilJ 447904..448863 (+) 960 WP_050169726.1 PilW family protein Machinery gene
  Q7644_RS02380 (Q7644_02390) pilK 448842..449453 (+) 612 WP_012503481.1 pilus assembly protein Machinery gene
  Q7644_RS02385 (Q7644_02395) pilL 449455..449928 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7644_RS02390 (Q7644_02400) - 449998..450306 (-) 309 WP_003706588.1 AzlD family protein -
  Q7644_RS02395 (Q7644_02405) - 450303..451014 (-) 712 Protein_467 AzlC family ABC transporter permease -
  Q7644_RS02400 (Q7644_02410) dut 451180..451632 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24448.91 Da        Isoelectric Point: 9.7900

>NTDB_id=863211 Q7644_RS02365 WP_341931137.1 446599..447261(+) (pilH) [Neisseria gonorrhoeae strain 2004S05-027]
MCTRKQQGFTLIELLIVMAIAAIMATIALPNMGGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGRGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYTFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKNNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=863211 Q7644_RS02365 WP_341931137.1 446599..447261(+) (pilH) [Neisseria gonorrhoeae strain 2004S05-027]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGGGCGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACACCTTCAATCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

95.455

100

0.955