Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   WDV80_RS09195 Genome accession   NZ_CP147733
Coordinates   1810157..1812172 (+) Length   671 a.a.
NCBI ID   WP_000926632.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SagR272_TC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1805157..1817172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV80_RS09175 (WDV80_09175) - 1805958..1806965 (+) 1008 WP_000505724.1 3-deoxy-7-phosphoheptulonate synthase -
  WDV80_RS09180 (WDV80_09180) acpS 1806990..1807349 (+) 360 WP_000635015.1 holo-ACP synthase -
  WDV80_RS09185 (WDV80_09185) alr 1807346..1808446 (+) 1101 WP_000625941.1 alanine racemase -
  WDV80_RS09190 (WDV80_09190) - 1808539..1810077 (+) 1539 WP_000043254.1 CHAP domain-containing protein -
  WDV80_RS09195 (WDV80_09195) recG/mmsA 1810157..1812172 (+) 2016 WP_000926632.1 ATP-dependent DNA helicase RecG Machinery gene
  WDV80_RS09200 (WDV80_09200) - 1812463..1813377 (+) 915 WP_000939997.1 aldo/keto reductase -
  WDV80_RS09205 (WDV80_09205) aroE 1813475..1814353 (+) 879 WP_001086864.1 shikimate dehydrogenase -
  WDV80_RS09210 (WDV80_09210) - 1814388..1815350 (-) 963 WP_000723059.1 asparaginase domain-containing protein -
  WDV80_RS09215 (WDV80_09215) - 1815419..1816801 (+) 1383 WP_000974899.1 HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75169.71 Da        Isoelectric Point: 6.6313

>NTDB_id=863031 WDV80_RS09195 WP_000926632.1 1810157..1812172(+) (recG/mmsA) [Streptococcus agalactiae strain SagR272_TC]
MLLQSPISNLKGFGPKSAEKFQKLDIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEKAVITGLVVTPANVQYYGFKRNRLS
FKLRQGEAVLNVSFFNQPYLADKIELGQEVAVFGKWDATKSAITGMKVLAQVEDDMQPVYRVAQGISQSTLIKAIKSAFE
ISAHLELKENLPATLLEKYRLMGRSQACLAMHFPKDITEYKQALRRIKFEELFYFQMNLQVLKSENKSETNGLPILYSKH
AMETKISSLPFILTNAQKRSLDEILSDMSSGAHMNRLLQGDVGSGKTVIAGLSMYAAYTAGFQSALMVPTEILAEQHYIS
LQELFPDLSIAILTSGMKAAVKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIITCWVKHEQLGTVLEWVKGELQKDAQVYVISPLIEESEALDLKN
AVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGYKQSYAVLVANPKTDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARR
VASDIVKDNNWKENTEWALILDNLRQHSDFD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=863031 WDV80_RS09195 WP_000926632.1 1810157..1812172(+) (recG/mmsA) [Streptococcus agalactiae strain SagR272_TC]
ATGCTATTACAATCACCAATTTCTAATCTTAAGGGATTTGGACCAAAATCAGCAGAAAAATTTCAGAAATTAGATATTTA
TACAGTAGAAGATTTACTTCTTTATTATCCGTTTCGCTATGAAGATTTTAAATCAAAATCTGTTTTTGATTTAGTGGATG
GTGAAAAAGCAGTCATTACAGGCCTAGTCGTTACTCCAGCTAATGTACAATATTATGGTTTTAAACGTAACCGTTTAAGT
TTTAAGTTGCGTCAAGGGGAAGCTGTCTTAAATGTTAGTTTTTTTAATCAACCCTATTTAGCTGATAAAATAGAACTTGG
TCAAGAGGTAGCTGTCTTTGGTAAATGGGATGCAACTAAATCAGCTATTACTGGGATGAAGGTTTTAGCTCAAGTTGAAG
ATGACATGCAACCTGTTTATCGCGTAGCTCAGGGAATTTCACAGTCTACTTTGATTAAAGCTATTAAGTCAGCTTTTGAA
ATCAGTGCGCATTTGGAATTGAAGGAAAATTTACCAGCTACTTTATTGGAAAAATACCGATTGATGGGTCGTAGTCAGGC
TTGTTTAGCTATGCATTTCCCAAAAGATATCACAGAGTATAAGCAAGCGCTCCGTCGGATTAAATTTGAAGAATTATTTT
ACTTTCAAATGAACCTTCAAGTTTTGAAATCCGAAAATAAATCTGAAACAAATGGTTTGCCTATTCTTTATAGTAAACAT
GCTATGGAGACAAAAATTTCCTCTTTACCTTTTATTCTAACGAATGCTCAAAAGCGCTCTTTAGATGAAATATTATCTGA
TATGTCATCGGGAGCTCATATGAATCGTTTATTGCAAGGAGATGTAGGATCAGGAAAGACAGTCATTGCTGGTCTATCAA
TGTATGCAGCTTATACAGCAGGTTTTCAATCGGCTTTGATGGTTCCAACGGAAATCCTAGCTGAACAACACTACATTAGT
CTGCAAGAGTTATTTCCAGATTTATCAATCGCTATATTAACTTCGGGTATGAAAGCAGCTGTTAAGCGTACGGTTTTAGC
AGCTATTGCAAATGGCTCGGTTGATATGATTGTAGGAACTCATGCTCTTATCCAGGACTCGGTACAGTACCATAAACTGG
GGCTTGTAATTACAGACGAGCAACATCGTTTTGGTGTTAAACAGCGTAGAATTTTCCGTGAAAAGGGAGAAAATCCTGAT
GTTTTAATGATGACAGCCACCCCAATTCCCCGAACTCTAGCAATCACAGCTTTTGGAGAAATGGATGTTTCTATTATTGA
TGAATTACCTGCCGGTCGTAAACCTATTATTACATGCTGGGTGAAACACGAGCAGCTAGGTACTGTGTTGGAATGGGTAA
AAGGTGAATTGCAAAAAGATGCTCAAGTGTATGTCATTTCACCGTTGATTGAAGAGTCAGAAGCTTTAGATTTAAAGAAT
GCAGTAGCATTGCATGCTGAATTATCTACTTATTTTGAAGGAATTGCTAAGGTTGCTCTTGTACATGGACGTATGAAAAA
TGATGAAAAAGATGCTATAATGCAAGATTTCAAGGATAAAAAAAGTCATATTTTAGTATCTACAACAGTTATTGAAGTAG
GGGTAAATGTCCCAAATGCAACGATCATGATTATTATGGATGCCGATCGTTTTGGATTAAGCCAGCTACATCAACTTCGT
GGGCGTGTTGGTCGTGGATATAAACAATCATACGCTGTTTTAGTGGCTAATCCCAAAACTGATTCTGGGAAAAAACGAAT
GACAATCATGACAGAAACGACAGATGGTTTCGTTTTAGCTGAGTCGGATTTAAAAATGCGTGGTTCTGGTGAAATCTTTG
GTACTCGTCAGTCTGGAATTCCAGAATTTCAAGTAGCTGATATCGTTGAGGATTATCCTATTTTAGAAGAAGCCAGACGT
GTTGCTAGTGATATTGTCAAAGATAATAATTGGAAAGAAAATACAGAATGGGCACTTATTCTAGATAATTTACGCCAACA
TTCAGATTTTGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(458-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)

RecG wedge domain (RecG_wedge)

(7-157)

DEAD/DEAH box helicase (DEAD)

(254-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.833

100

0.718
  recG/mmsA Streptococcus pneumoniae R36A

71.833

100

0.718
  recG Bacillus subtilis subsp. subtilis str. 168

50.225

99.404

0.499
  recG Neisseria meningitidis strain C311

38.965

97.914

0.382