Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q7648_RS02660 Genome accession   NZ_CP131632
Coordinates   520836..521444 (+) Length   202 a.a.
NCBI ID   WP_341944759.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2018S05-288     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 515836..526444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7648_RS02635 (Q7648_02655) - 516254..516586 (+) 333 WP_003687908.1 hypothetical protein -
  Q7648_RS02640 (Q7648_02660) - 516945..517454 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q7648_RS02645 (Q7648_02665) - 517684..518265 (-) 582 WP_003698180.1 superoxide dismutase -
  Q7648_RS02650 (Q7648_02670) dnaB 518428..519834 (+) 1407 WP_047918976.1 replicative DNA helicase -
  Q7648_RS02655 (Q7648_02675) pilH 520142..520804 (+) 663 WP_048339589.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7648_RS02660 (Q7648_02680) pilV 520836..521444 (+) 609 WP_341944759.1 type IV pilus modification protein PilV Machinery gene
  Q7648_RS02665 (Q7648_02685) pilJ 521441..522403 (+) 963 WP_341944760.1 PilW family protein Machinery gene
  Q7648_RS02670 (Q7648_02690) pilK 522382..522993 (+) 612 WP_341944761.1 pilus assembly protein Machinery gene
  Q7648_RS02675 (Q7648_02695) pilL 522995..523468 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7648_RS02680 (Q7648_02700) - 523538..523846 (-) 309 WP_025456241.1 AzlD family protein -
  Q7648_RS02685 (Q7648_02705) - 523843..524552 (-) 710 Protein_520 AzlC family ABC transporter permease -
  Q7648_RS02690 (Q7648_02710) dut 524718..525170 (+) 453 WP_003687923.1 dUTP diphosphatase -
  Q7648_RS02695 (Q7648_02715) dapC 525248..526435 (+) 1188 WP_123771553.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21787.83 Da        Isoelectric Point: 5.0177

>NTDB_id=863024 Q7648_RS02660 WP_341944759.1 520836..521444(+) (pilV) [Neisseria gonorrhoeae strain 2018S05-288]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDLDSNKKN
YSLYVGKQTPSAVDGKFTLDAEKSKAQLAEEQLKRFSYELKNALPDAVAIHYAVCKDSSGGAPTLSGGTFSPNCDDKANG
DTLIKVLWVNDSAGDSDIARTNLEVSGGNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=863024 Q7648_RS02660 WP_341944759.1 520836..521444(+) (pilV) [Neisseria gonorrhoeae strain 2018S05-288]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGCTGATAGAAGTCTTGGTTGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACGGTCGCTTCCGTCAGGGAAGCGGAGACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTTGGATAGCAACAAGAAAAAC
TATAGTCTTTACGTGGGAAAACAGACACCATCAGCTGTGGATGGTAAGTTTACGCTTGATGCCGAGAAAAGTAAGGCGCA
GTTGGCAGAGGAACAATTGAAGAGATTTAGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTGGCGCGCCGACATTGTCCGGCGGTACTTTTTCTCCAAATTGCGATGATAAGGCAAACGGG
GATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATCGCCCGTACGAATCTTGAAGTGAGCGG
CGGCAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

87.864

100

0.896
  pilI Neisseria gonorrhoeae MS11

85.149

100

0.851
  pilV Neisseria gonorrhoeae MS11

85.149

100

0.851