Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   Q7648_RS02670 Genome accession   NZ_CP131632
Coordinates   522382..522993 (+) Length   203 a.a.
NCBI ID   WP_341944761.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2018S05-288     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517382..527993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7648_RS02645 (Q7648_02665) - 517684..518265 (-) 582 WP_003698180.1 superoxide dismutase -
  Q7648_RS02650 (Q7648_02670) dnaB 518428..519834 (+) 1407 WP_047918976.1 replicative DNA helicase -
  Q7648_RS02655 (Q7648_02675) pilH 520142..520804 (+) 663 WP_048339589.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q7648_RS02660 (Q7648_02680) pilV 520836..521444 (+) 609 WP_341944759.1 type IV pilus modification protein PilV Machinery gene
  Q7648_RS02665 (Q7648_02685) pilJ 521441..522403 (+) 963 WP_341944760.1 PilW family protein Machinery gene
  Q7648_RS02670 (Q7648_02690) pilK 522382..522993 (+) 612 WP_341944761.1 pilus assembly protein Machinery gene
  Q7648_RS02675 (Q7648_02695) pilL 522995..523468 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  Q7648_RS02680 (Q7648_02700) - 523538..523846 (-) 309 WP_025456241.1 AzlD family protein -
  Q7648_RS02685 (Q7648_02705) - 523843..524552 (-) 710 Protein_520 AzlC family ABC transporter permease -
  Q7648_RS02690 (Q7648_02710) dut 524718..525170 (+) 453 WP_003687923.1 dUTP diphosphatase -
  Q7648_RS02695 (Q7648_02715) dapC 525248..526435 (+) 1188 WP_123771553.1 succinyldiaminopimelate transaminase -
  Q7648_RS02700 (Q7648_02720) yaaA 526591..527370 (+) 780 WP_047917077.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22032.94 Da        Isoelectric Point: 7.5809

>NTDB_id=863026 Q7648_RS02670 WP_341944761.1 522382..522993(+) (pilK) [Neisseria gonorrhoeae strain 2018S05-288]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTDDNGNEEAFGNIVVQGKPTVEAVKRPCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=863026 Q7648_RS02670 WP_341944761.1 522382..522993(+) (pilK) [Neisseria gonorrhoeae strain 2018S05-288]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAGATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTCCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.074

100

0.951