Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   KI216_RS01970 Genome accession   NZ_AP024595
Coordinates   428237..428866 (-) Length   209 a.a.
NCBI ID   WP_005013029.1    Uniprot ID   N9C7F9
Organism   Acinetobacter bouvetii strain JCM 18991     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423237..433866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI216_RS01935 (ACBO_03670) mlaE 423542..424321 (+) 780 WP_005013047.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  KI216_RS01940 (ACBO_03680) - 424321..425004 (+) 684 WP_005013045.1 outer membrane lipid asymmetry maintenance protein MlaD -
  KI216_RS01945 (ACBO_03690) - 425023..425658 (+) 636 WP_005013044.1 MlaC/ttg2D family ABC transporter substrate-binding protein -
  KI216_RS01950 (ACBO_03700) - 425671..425958 (+) 288 WP_005013042.1 STAS domain-containing protein -
  KI216_RS01955 (ACBO_03710) - 426052..427065 (-) 1014 WP_005013032.1 CorA family divalent cation transporter -
  KI216_RS01960 (ACBO_03720) - 427220..427816 (+) 597 WP_005013031.1 TIGR00730 family Rossman fold protein -
  KI216_RS01965 (ACBO_03730) - 427813..428214 (+) 402 WP_005013030.1 NUDIX hydrolase -
  KI216_RS01970 (ACBO_03740) comF 428237..428866 (-) 630 WP_005013029.1 ComF family protein Machinery gene
  KI216_RS01975 (ACBO_03750) recG 428998..431043 (-) 2046 WP_005013027.1 ATP-dependent DNA helicase RecG -
  KI216_RS01980 (ACBO_03760) - 431094..431867 (+) 774 WP_005013025.1 NAD-dependent epimerase/dehydratase family protein -
  KI216_RS01985 (ACBO_03770) - 431918..432151 (+) 234 WP_026253392.1 DUF6500 family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24120.49 Da        Isoelectric Point: 9.8136

>NTDB_id=86299 KI216_RS01970 WP_005013029.1 428237..428866(-) (comF) [Acinetobacter bouvetii strain JCM 18991]
MLKIINSVMRHGLKQMLPCVLCGIDAQHKHTLCKDCWNSLPWLKEPVLRQEMQVFSACHYAYPLDRIIQQFKYQQHLHYQ
TALAGLLRELKLPKIQAIVPMPISLEKLTERGYNQSLLLAKGLSAHLNVPIWQPVQRLQQHSQKGLSRLERLQDIQQQFV
MNEKPRVRYRKVLIVDDVVTTGSSIHALKQCLEQLNCRQISAVCLAAAQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=86299 KI216_RS01970 WP_005013029.1 428237..428866(-) (comF) [Acinetobacter bouvetii strain JCM 18991]
ATGCTAAAAATAATCAACAGCGTCATGCGCCACGGCTTAAAGCAAATGTTGCCTTGCGTGCTCTGCGGCATCGATGCACA
GCACAAACATACATTATGCAAAGACTGCTGGAACAGCCTGCCTTGGCTGAAAGAACCCGTTTTGCGTCAGGAAATGCAGG
TTTTTAGCGCCTGCCATTATGCCTATCCTTTAGACCGCATCATTCAGCAATTTAAATATCAGCAGCATCTGCATTATCAA
ACGGCGCTGGCAGGTTTATTGCGCGAATTAAAGCTCCCTAAAATTCAAGCCATCGTGCCGATGCCGATCTCTTTGGAAAA
ATTGACTGAACGCGGCTATAACCAATCCCTGCTGCTGGCCAAAGGATTGTCTGCGCATTTGAATGTCCCCATTTGGCAGC
CGGTTCAGCGCTTGCAGCAGCATTCGCAGAAAGGCCTCAGCCGCTTAGAGCGCTTGCAGGATATTCAGCAGCAGTTTGTA
ATGAATGAAAAACCAAGAGTGCGTTACCGAAAAGTCTTGATTGTAGATGATGTGGTGACCACCGGCAGCTCCATTCACGC
CCTAAAACAGTGTTTAGAGCAGCTGAACTGCCGGCAGATATCCGCGGTATGCTTAGCTGCCGCTCAATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9C7F9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.058

99.522

0.608
  comF Acinetobacter baumannii D1279779

60.577

99.522

0.603

Multiple sequence alignment