Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   WDM00_RS09290 Genome accession   NZ_CP147726
Coordinates   2036117..2038147 (-) Length   676 a.a.
NCBI ID   WP_000029988.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNCTC 6536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2031117..2043147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDM00_RS09265 (WDM00_09265) moaB 2031227..2031739 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  WDM00_RS09270 (WDM00_09270) moaA 2031799..2032788 (-) 990 WP_142737315.1 GTP 3',8-cyclase MoaA -
  WDM00_RS09275 (WDM00_09275) - 2033095..2033985 (+) 891 WP_053033875.1 YvcK family protein -
  WDM00_RS09280 (WDM00_09280) luxU 2033974..2034315 (-) 342 WP_053033874.1 quorum-sensing phosphorelay protein LuxU -
  WDM00_RS09285 (WDM00_09285) luxO 2034319..2035686 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  WDM00_RS09290 (WDM00_09290) uvrB 2036117..2038147 (-) 2031 WP_000029988.1 excinuclease ABC subunit UvrB Machinery gene
  WDM00_RS09300 (WDM00_09300) rsxA 2039029..2039610 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  WDM00_RS09305 (WDM00_09305) rsxB 2039610..2040197 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -
  WDM00_RS09310 (WDM00_09310) rsxC 2040206..2042650 (+) 2445 WP_185841270.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 76629.37 Da        Isoelectric Point: 5.0342

>NTDB_id=862796 WDM00_RS09290 WP_000029988.1 2036117..2038147(-) (uvrB) [Vibrio cholerae strain CNCTC 6536]
MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLH
LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLA
RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEY
ELTKSGGEVAEQVVRPTGLLDPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD
IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITK
SMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEIS
KLEAAMYQHAQNLEFELAAQKRDEIHQLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=862796 WDM00_RS09290 WP_000029988.1 2036117..2038147(-) (uvrB) [Vibrio cholerae strain CNCTC 6536]
ATGAGCAAAGCATTTGAATTGGTTTCAGACTATCAACCTGCTGGTGATCAGCCTACCGCGATTAAGCAATTGCTGGAGGG
GTTGGAAGCGGGCTTGGCTCATCAAACTCTGCTTGGGGTAACGGGTTCGGGTAAAACCTTTACGTTAGCGAATGTGATTG
CCACCGCGCAGCGTCCCACCATTATACTTGCGCCTAATAAGACACTGGCGGCTCAATTGTACGGCGAAATGAAAGCCTTT
TTTCCCAACAATGCGGTGGAGTATTTCGTTTCTTACTACGACTACTATCAACCAGAAGCCTATGTACCGACCACGGATAC
TTTTATAGAAAAAGACGCGTCAGTGAACGCTCATATTGAACAGATGCGCTTATCAGCCACTAAAGCCTTACTTGAGCGCA
AAGATGCGGTGATTGTCGCTTCAGTTTCTGCCATCTACGGTCTGGGCGATCCGGACTCTTATCTAAAAATGATGCTCCAT
TTACGTCGTGGTGATGTGATTAATCAACGTGACATGTTGCGTCGTTTGGCGGAGCTGCAATATTCACGCAATGATATGGC
ATTTGAGCGCGGTCAGTTCCGGGTACGCGGAGAAGTGATTGATATTTTCCCTGCCGAATCGGATCAAGAAGCTGTTCGAG
TGGAAATGTTTGATGATGAAGTCGAATGCATCAGCTTATTTGACCCGCTGACGGGCGTGATTACGTCACGCGATTTAGCT
CGGTTTACGATTTACCCCAAAACTCACTATGTCACCCCACGCGAGCGCATTCTTGAGGCGATAGAGCAGATTAAGAGCGA
GTTGCAGGTCCGCCGCCAATATTTGCTGGATAACAATAAATTGCTGGAAGAGCAGCGGATTTCTCAGCGAACTCAGTTTG
ATATTGAGATGATGAACGAATTGGGATTCTGCTCAGGGATCGAAAACTACTCACGTTACCTAAGTGGTCGTGCAGAAGGC
GAGCCGCCTCCAACGCTCTTTGATTACTTGCCTCACGATGGCTTGCTGATCATCGATGAATCACACGTCACCGTGCCGCA
AATTGGCGCGATGTTTAAAGGCGATCGTTCGCGAAAAGAAACGCTGGTGGAGTTCGGTTTTCGCCTGCCGTCAGCCTTGG
ATAACCGCCCACTTAAGTTTGATGAATTTGAAGCATTAGCACCGCAAACCATCTTTGTGTCAGCAACACCGAGTGAATAT
GAGCTCACTAAATCGGGTGGTGAAGTGGCCGAGCAGGTGGTGCGTCCAACCGGTTTGTTAGACCCGATCATTGAAGTACG
TCCGGTCGCCACTCAGGTGGATGATCTGCTTTCTGAAGCGCGCATTCGCGCGGCCAATGATGAGCGGATTTTGGTGACTA
CCTTAACCAAACGCATGGCCGAGGACTTAACCGAATATCTGCATGAGCATGGTGTGAAAGTTCGCTATTTACACTCGGAC
ATTGATACCGTCGAACGGGTAGAAATTATTCGTGATTTACGATTAGGGGTGTTTGATGTGTTGGTGGGGATCAACTTGCT
ACGTGAAGGTCTGGACATGCCAGAGGTCGCTTTAGTGGCGATTTTGGATGCTGATAAAGAAGGCTTTTTGCGTTCCGAAC
GTTCACTCATTCAGACCATGGGTCGTGCAGCACGTAACGTGAATGGTAAAGCAATTTTGTATGCCGACTCGATCACCAAA
TCCATGCGTAAAGCGATCGATGAAACCGAGCGTCGCCGTGAGAAGCAGCTGGCTTATAATGAGCAGCGCGGTATCACGCC
GCAGCCTTTAAAACGCAGCGTTAAAGACATCATGGAGCTGGGCGATATTGCGAAATCGCGTAAACAGAAGAACAGCAAAG
TGGTGCCATTGGCGAAAGTAGCTGAAGAATCGGCGGCTTACCAAGTGTTGACTCCTCAGCAGCTTGAAAAAGAGATCAGT
AAATTAGAAGCCGCAATGTATCAGCATGCACAGAACTTAGAGTTTGAGTTAGCGGCGCAAAAACGTGATGAAATTCATCA
GTTGCGTCAGCAGTTTATCGCCAATAGTTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(16-119)

UvrB/uvrC motif (UVR)

(636-671)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB interaction domain (UvrB_inter)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.539

97.485

0.541
  uvrB Streptococcus pneumoniae R6

55.539

97.485

0.541
  uvrB Streptococcus pneumoniae D39

55.539

97.485

0.541