Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   WDM00_RS01150 Genome accession   NZ_CP147726
Coordinates   236184..238262 (-) Length   692 a.a.
NCBI ID   WP_142737549.1    Uniprot ID   -
Organism   Vibrio cholerae strain CNCTC 6536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 231184..243262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDM00_RS01135 (WDM00_01135) ompR 232307..233029 (+) 723 WP_000230025.1 two-component system response regulator OmpR -
  WDM00_RS01140 (WDM00_01140) envZ 233098..234414 (+) 1317 WP_088127892.1 two-component system sensor histidine kinase EnvZ -
  WDM00_RS01145 (WDM00_01145) - 234439..235839 (-) 1401 WP_162797300.1 uracil-xanthine permease family protein -
  WDM00_RS01150 (WDM00_01150) recG 236184..238262 (-) 2079 WP_142737549.1 ATP-dependent DNA helicase RecG Machinery gene
  WDM00_RS01155 (WDM00_01155) spoT 238380..240497 (-) 2118 WP_142737548.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  WDM00_RS01160 (WDM00_01160) rpoZ 240529..240801 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  WDM00_RS01165 (WDM00_01165) gmk 240909..241532 (-) 624 WP_000515793.1 guanylate kinase -
  WDM00_RS01170 (WDM00_01170) - 241900..242571 (+) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76954.17 Da        Isoelectric Point: 7.3972

>NTDB_id=862749 WDM00_RS01150 WP_142737549.1 236184..238262(-) (recG) [Vibrio cholerae strain CNCTC 6536]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALVLLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQSAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGECDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=862749 WDM00_RS01150 WP_142737549.1 236184..238262(-) (recG) [Vibrio cholerae strain CNCTC 6536]
ATGTCACAACTCCTCTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACGGTGCAGGATCTGCTGTTTCATCTTCCGCTGCGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCGGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTAAAAATCAGTGATGGCAACGGTACACTGACGCTGCGTTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAATTTGTGCATGCCTATGGGGAGATCAAACGCGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCGCAAACGCCCGATGTTGAGCCGAACCTGACTCCGGTTTACCCAACCACAGAAGGGCTACGCCAACTC
ACTCTACGTAATCTCACCGACCAAGCGTTGGTGCTACTGGAAAAATCTGCGGTGCAGGAGTTACTGCCATCCGGGCTTTA
CGATCAGCAGATGACCTTAGCCCAAGCGCTGAAAATTATTCATCGCCCATCGGCGGATATCGATTTGCGCCTGTTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTGATCATGGAAGAACTGCTGGCACAGAATCTCTCCATGCTGGCGATTCGCAGC
CAAGGCCAGCAAGATGTGGCCTTGCCACTGGCCCCCGTCCACCAACTCAAACAACAACTCTTGGCACAGCTGCCTTTTAC
GCCGACTAAGGCGCAGCAGCGTGTGGTTGCCGAAATCGAAGCGGATTTAGAAAAACCGCATCCTATGATGCGCTTAGTGC
AAGGCGATGTCGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCAGTGCGGGCGATTGAGCATGGTTATCAAGTGGCC
TTGATGGCTCCCACCGAGCTACTGGCCGAGCAGCACTCGCTCAATTTTGCGCAGTGGCTGGAACCTATGGGCATTCAAGT
CGGCTGGCTCGCGGGTAAGCTTAAAGGCAAAGCACGTGAAACGGAACTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTCGGCACCCATGCACTGTTTCAAGAGCAAGTATCGTTTGACCATCTAGCCTTGGTGATTATTGATGAGCAGCATCGC
TTCGGGGTGCATCAGCGTTTAGAGCTGCGCGAGAAAGGCGCGAAACAAAGCGCGTATCCGCATCAGCTCATCATGACTGC
TACTCCGATCCCGCGTACTTTGGCGATGACGGCTTATGCCGATTTGGAAACCTCAGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTCGAGCGCATTCGCCACGCCTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCGCAAGCGGCCGCAGAAACGGC
CGAGGAACTGCAACGTAAACTGCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCCGCCGAAAAACAAGCGG
TAATGCAAGCGTTTAAAAACAATGAGCTGCATCTGCTCGTCGCCACTACAGTGATTGAAGTGGGCGTGGATGTGCCCAAT
GCCAGCTTGATGATCATTGAAAACCCCGAACGTTTGGGGCTGGCTCAACTACACCAGCTACGCGGGCGTGTTGGGCGTGG
TACCGTAGCCAGCCATTGTGTGCTGCTGTTTCATGCACCACTCTCCAAAACCGCGCAAAAGCGTTTAGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGCGGCCCCGGAGAGCTATTAGGCACCAAACAAACC
GGCTTAGCCGATTTCAAAATTGCCGATCTGGTACGCGATCAGCAATTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAAAATGCACAAGCTATCATCGACCGCTGGTTAGGTGAGTGTGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

DEAD/DEAH box helicase (DEAD)

(271-432)

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

RecG wedge domain (RecG_wedge)

(15-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.595

97.11

0.491
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.324

94.075

0.37