Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   Q6D61_RS11145 Genome accession   NZ_CP131614
Coordinates   2370688..2371323 (+) Length   211 a.a.
NCBI ID   WP_283859340.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 1709-25403     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2365688..2376323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6D61_RS11130 (Q6D61_11130) - 2366394..2367638 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  Q6D61_RS11135 (Q6D61_11135) - 2367726..2368259 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  Q6D61_RS11140 (Q6D61_11140) comA 2368390..2370615 (+) 2226 WP_031633598.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q6D61_RS11145 (Q6D61_11145) exbB 2370688..2371323 (+) 636 WP_283859340.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Q6D61_RS11150 (Q6D61_11150) - 2371320..2371760 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  Q6D61_RS11155 (Q6D61_11155) lpxK 2371760..2372758 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  Q6D61_RS11160 (Q6D61_11160) - 2372796..2372981 (+) 186 WP_003091157.1 Trm112 family protein -
  Q6D61_RS11165 (Q6D61_11165) kdsB 2372981..2373745 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q6D61_RS11170 (Q6D61_11170) - 2373745..2374209 (+) 465 WP_034040018.1 low molecular weight protein-tyrosine-phosphatase -
  Q6D61_RS11175 (Q6D61_11175) murB 2374206..2375225 (+) 1020 WP_034040020.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.08 Da        Isoelectric Point: 7.2795

>NTDB_id=862750 Q6D61_RS11145 WP_283859340.1 2370688..2371323(+) (exbB) [Pseudomonas aeruginosa strain 1709-25403]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMNNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=862750 Q6D61_RS11145 WP_283859340.1 2370688..2371323(+) (exbB) [Pseudomonas aeruginosa strain 1709-25403]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGAACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81