Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Q5709_RS00810 Genome accession   NZ_CP131483
Coordinates   175006..176421 (-) Length   471 a.a.
NCBI ID   WP_005017156.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain MC-14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 170006..181421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS00795 (Q5709_00795) lptG 171059..172129 (+) 1071 WP_005017161.1 LPS export ABC transporter permease LptG -
  Q5709_RS00800 (Q5709_00800) gpmI 172248..173798 (+) 1551 WP_005017159.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  Q5709_RS00805 (Q5709_00805) - 173818..175005 (+) 1188 WP_005017158.1 S41 family peptidase -
  Q5709_RS00810 (Q5709_00810) pilR 175006..176421 (-) 1416 WP_005017156.1 sigma-54-dependent transcriptional regulator Regulator
  Q5709_RS00815 (Q5709_00815) pilS 176446..178011 (-) 1566 WP_174498870.1 sensor histidine kinase Regulator
  Q5709_RS00820 (Q5709_00820) - 178026..178661 (-) 636 WP_262475652.1 response regulator -
  Q5709_RS00825 (Q5709_00825) pbpG 178880..179911 (+) 1032 WP_005017149.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  Q5709_RS00830 (Q5709_00830) thrC 179999..181144 (-) 1146 WP_005017146.1 threonine synthase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53005.02 Da        Isoelectric Point: 6.1946

>NTDB_id=862621 Q5709_RS00810 WP_005017156.1 175006..176421(-) (pilR) [Acinetobacter radioresistens strain MC-14]
MTNQQALILLVDDEEDLCTLMQMSLAKINIRTHIAHGLEQAKKLFQQHAYDACLTDLNLPDGNGLELVQYVSQLYPCTPI
AVLTAYGNMEIAISALKAGAFDFVSKPVNQAHLQQLVQKALNTPQSAQQLVQDALENRMLIGTSLPIQQLKIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSDGPFIAINCGAIPSDLMESELFGHKKGSFTGASQDKQGLIYSAHGGSLFLDE
IAELPLAMQVKLLRAVQEKKIRPIGSDQEIDVDFRVISASHQDLEILVQQGKFRQDLFFRIHVMDIVLPPLREREDDILL
LAKHFIQEVCKEWDIPNKILTERGQQFLMQQYFPGNVRELRNIIERAITLSDNEYIDLPQLQSAPLRNVQNFVAGQINHE
PLTDQVIPLSPHRKIPAEGLEQYLENIEKEVLLTALNQTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=862621 Q5709_RS00810 WP_005017156.1 175006..176421(-) (pilR) [Acinetobacter radioresistens strain MC-14]
ATGACAAATCAGCAGGCACTTATATTATTGGTCGATGATGAGGAGGACCTTTGTACTTTAATGCAAATGTCTTTGGCCAA
AATCAATATCAGGACCCACATTGCACATGGACTGGAGCAGGCAAAAAAACTTTTTCAGCAACATGCTTATGATGCCTGCC
TGACTGATCTGAATTTGCCAGATGGCAATGGGCTGGAATTAGTCCAGTATGTTTCACAACTTTATCCTTGTACACCAATC
GCCGTTTTGACCGCCTATGGCAATATGGAAATTGCTATTTCAGCACTCAAGGCTGGCGCTTTTGATTTTGTCAGTAAACC
TGTCAATCAGGCCCATCTACAGCAACTGGTTCAAAAAGCACTCAATACACCTCAATCTGCTCAGCAACTGGTTCAAGATG
CTTTGGAAAATCGGATGTTGATTGGCACTTCTTTGCCAATCCAGCAGCTCAAAATTGCCTTGAAAAAAATTGCCCGCTCA
CAGGCACCTGTCTTTATTACTGGTGAATCCGGTACAGGCAAGGAGGTAGTGGCTAATCTGGTGCATCGCTTAAGTAACCG
CAGTGATGGTCCATTTATTGCTATTAACTGTGGCGCTATTCCAAGCGATCTCATGGAAAGTGAGCTGTTTGGACACAAAA
AGGGTAGTTTTACCGGCGCAAGTCAGGACAAACAGGGACTAATTTATTCTGCCCATGGCGGTAGCTTGTTTCTGGATGAA
ATTGCTGAACTGCCTCTGGCCATGCAGGTTAAATTACTCCGTGCCGTACAGGAAAAGAAAATCCGTCCGATTGGTAGTGA
TCAGGAAATTGATGTGGATTTTCGTGTAATTAGTGCCAGTCATCAGGACCTGGAAATACTGGTACAGCAAGGTAAGTTCC
GGCAGGATCTCTTCTTTCGGATTCATGTCATGGATATTGTTCTGCCTCCCCTGCGTGAACGTGAAGATGATATTCTTCTG
TTGGCTAAACATTTTATTCAGGAAGTATGTAAGGAGTGGGATATTCCCAATAAAATTCTGACCGAGCGCGGCCAGCAATT
TCTGATGCAGCAATATTTTCCGGGGAATGTGCGTGAACTGCGTAATATTATCGAACGTGCGATCACATTAAGTGATAATG
AATATATTGATTTACCGCAACTACAAAGTGCACCTTTGCGCAATGTCCAAAATTTTGTAGCAGGCCAAATTAATCATGAA
CCGCTAACGGACCAAGTTATTCCGTTGAGCCCTCACAGGAAAATTCCTGCCGAAGGCCTGGAGCAGTATCTGGAAAATAT
TGAAAAAGAAGTTCTGCTCACTGCACTGAACCAGACACACTGGAACCGGACTTTGGCTGCTAAAAAACTTGGAATGAGTT
TTCGCTCTTTACGTTATCGACTTAAAAAATTTGGGCTGGATACCGATGATGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.788

100

0.749
  pilR Pseudomonas aeruginosa PAK

48.614

99.575

0.484