Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   Q5709_RS00815 Genome accession   NZ_CP131483
Coordinates   176446..178011 (-) Length   521 a.a.
NCBI ID   WP_174498870.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain MC-14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 171446..183011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5709_RS00800 (Q5709_00800) gpmI 172248..173798 (+) 1551 WP_005017159.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  Q5709_RS00805 (Q5709_00805) - 173818..175005 (+) 1188 WP_005017158.1 S41 family peptidase -
  Q5709_RS00810 (Q5709_00810) pilR 175006..176421 (-) 1416 WP_005017156.1 sigma-54-dependent transcriptional regulator Regulator
  Q5709_RS00815 (Q5709_00815) pilS 176446..178011 (-) 1566 WP_174498870.1 sensor histidine kinase Regulator
  Q5709_RS00820 (Q5709_00820) - 178026..178661 (-) 636 WP_262475652.1 response regulator -
  Q5709_RS00825 (Q5709_00825) pbpG 178880..179911 (+) 1032 WP_005017149.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  Q5709_RS00830 (Q5709_00830) thrC 179999..181144 (-) 1146 WP_005017146.1 threonine synthase -
  Q5709_RS00835 (Q5709_00835) - 181202..182506 (-) 1305 WP_005017143.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59301.13 Da        Isoelectric Point: 5.8116

>NTDB_id=862622 Q5709_RS00815 WP_174498870.1 176446..178011(-) (pilS) [Acinetobacter radioresistens strain MC-14]
MAPLRPASLLQTIYRLGEWYSAYRLVLALSLNIIFALTLETVAQDYQHPDLYFYSIVGYALISCIQLIFYKILPFEISKQ
LILLFIVDVCCFSLLNFALGGPNLHLSLLFVVTVFAATILLRPQLALIITLVAVISVIYQQVVGSFFNSSHLNSISNSAL
LAFLFFVMYGIGQIAVQRFRLLENLNFYQSIELNQLQNINRAILEQIEVGYLVLDEQQQVILNNPAACSLLGIPPIFTDE
KYFLRKLQPDLYTLIRFSDLKDGERFLFESQLSPYSVDIQVQKLLVPHQALTLLILQDAQKIKQQVQQLKLMALGQLSAS
IAHEIRNPLAAIVQANELLADSQPEQLQMLTGMIDRQSQRIDKIIHDTLNMARNSPTEPAKIRLSGFLSQVLNEDLIDIK
QAVQLQIEQDIWIYFDELQLRQVLINLIRNALRHNSAEQSFIIIRVHGTEERGWIDVIDFGQGVAERDISQLFKPFFSTE
INGTGLGLYLSHSFCEANHAKLTYVKQQQGACFRIECSIIY

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=862622 Q5709_RS00815 WP_174498870.1 176446..178011(-) (pilS) [Acinetobacter radioresistens strain MC-14]
ATGGCCCCTCTACGCCCTGCCTCACTGCTTCAGACCATCTACCGTCTGGGAGAGTGGTACAGTGCTTATCGTCTTGTTTT
AGCACTTAGTCTTAATATTATTTTTGCACTAACCCTTGAGACTGTTGCTCAAGACTACCAGCATCCTGACCTGTACTTTT
ATAGTATTGTCGGTTATGCCCTGATCAGCTGTATCCAGCTGATTTTTTATAAAATTCTACCTTTTGAAATTTCGAAGCAG
CTTATTTTACTGTTTATAGTAGATGTATGCTGTTTTAGCCTGCTAAATTTTGCACTGGGTGGACCCAATCTGCACTTAAG
TCTACTTTTTGTGGTGACGGTCTTTGCCGCAACAATTTTACTCAGGCCCCAGCTTGCTTTAATTATCACACTGGTTGCTG
TAATTAGTGTGATTTACCAGCAGGTAGTAGGAAGCTTTTTTAACAGCTCCCATCTCAACAGTATCAGTAATAGTGCTTTA
TTAGCTTTTTTATTTTTTGTGATGTATGGCATTGGACAGATTGCTGTACAGCGGTTTCGCCTTTTGGAAAACCTGAATTT
TTATCAGTCCATTGAGCTTAACCAGCTACAGAATATTAACCGGGCTATTTTGGAGCAAATTGAGGTAGGCTATTTAGTTT
TAGATGAGCAGCAGCAGGTGATTTTAAATAATCCGGCAGCCTGTTCATTACTAGGTATTCCACCGATTTTTACTGATGAA
AAGTATTTTCTACGTAAACTCCAGCCAGACCTGTATACGCTTATCCGGTTTAGTGACTTAAAAGATGGTGAAAGGTTCCT
GTTTGAATCACAGCTTTCACCTTACAGTGTCGATATACAGGTTCAGAAACTTCTTGTGCCTCATCAAGCTTTAACCTTGT
TGATATTGCAGGATGCCCAGAAAATCAAGCAGCAGGTACAACAATTAAAACTGATGGCACTGGGACAGCTTTCGGCCAGT
ATTGCCCATGAAATTCGTAATCCTTTGGCAGCTATTGTTCAGGCTAATGAATTATTAGCTGACAGCCAGCCAGAACAGTT
GCAGATGCTCACAGGCATGATTGACCGGCAGTCACAACGTATTGACAAGATTATTCATGATACCTTGAATATGGCACGTA
ACAGTCCGACTGAGCCTGCTAAAATCAGGTTATCAGGTTTTCTTTCCCAAGTTTTAAATGAAGACCTGATCGATATAAAA
CAGGCTGTACAGCTACAGATTGAGCAGGATATCTGGATTTATTTTGATGAACTCCAGCTACGTCAAGTGCTTATTAATCT
GATCCGTAATGCATTAAGGCATAATTCAGCAGAGCAGTCTTTTATAATTATACGGGTACATGGCACAGAAGAACGCGGCT
GGATTGATGTTATTGATTTTGGTCAAGGCGTAGCAGAGCGCGATATTTCACAATTATTTAAACCCTTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTATATTTATCTCACAGTTTTTGTGAGGCTAATCATGCAAAACTTACTTATGTCAAGCA
ACAACAAGGCGCATGTTTTCGAATCGAATGCTCCATTATTTATTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

63.178

99.04

0.626