Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   Q4617_RS12490 Genome accession   NZ_CP131470
Coordinates   2543783..2544166 (-) Length   127 a.a.
NCBI ID   WP_004640629.1    Uniprot ID   -
Organism   Acinetobacter junii strain SC22     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2538783..2549166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS12475 (Q4617_12475) - 2540691..2542778 (-) 2088 WP_112986175.1 methyl-accepting chemotaxis protein -
  Q4617_RS12480 (Q4617_12480) - 2542825..2543361 (-) 537 WP_004908738.1 chemotaxis protein CheW -
  Q4617_RS12485 (Q4617_12485) - 2543400..2543762 (-) 363 WP_004664659.1 PleD family two-component system response regulator -
  Q4617_RS12490 (Q4617_12490) pilG 2543783..2544166 (-) 384 WP_004640629.1 twitching motility response regulator PilG Regulator
  Q4617_RS12495 (Q4617_12495) - 2544446..2545114 (+) 669 WP_112986176.1 hypothetical protein -
  Q4617_RS12500 (Q4617_12500) - 2545273..2546988 (+) 1716 WP_112986177.1 proline--tRNA ligase -
  Q4617_RS12505 (Q4617_12505) - 2547048..2547383 (-) 336 WP_112986178.1 YegP family protein -
  Q4617_RS12510 (Q4617_12510) - 2547525..2547869 (-) 345 WP_004908748.1 zinc ribbon domain-containing protein YjdM -
  Q4617_RS12515 (Q4617_12515) - 2547952..2548302 (-) 351 WP_004908749.1 DUF488 domain-containing protein -
  Q4617_RS12520 (Q4617_12520) - 2548327..2548662 (-) 336 WP_112986179.1 DUF2004 domain-containing protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14199.33 Da        Isoelectric Point: 4.7278

>NTDB_id=862558 Q4617_RS12490 WP_004640629.1 2543783..2544166(-) (pilG) [Acinetobacter junii strain SC22]
MEDKFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSLNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLSAIRNHVSA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=862558 Q4617_RS12490 WP_004640629.1 2543783..2544166(-) (pilG) [Acinetobacter junii strain SC22]
ATGGAAGATAAATTTCAAAATTTAAAAGTAATGGTGATTGACGATTCTAAAACGATTCGACGTACAGCTGAGACACTGTT
ACAACGCGAAGGTTGTGAGGTGATTACAGCTGTCGATGGTTTTGAAGCATTATCGAAAATTGCGGAAGCAAATCCTGATA
TCGTATTTGTCGATATTATGATGCCTCGTCTAGATGGTTACCAAACCTGTGCATTAATTAAAAACTCTCTAAATTATCAA
AATATTCCAGTAATCATGTTATCAAGCAAAGATGGTTTGTTTGATCAAGCCAAAGGGCGTGTCGTGGGGTCAGATGAATA
TTTAACTAAGCCATTTAGTAAAGATGAGCTGTTAAGTGCGATTCGTAACCACGTAAGCGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

96.85

100

0.969
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.228

89.764

0.37