Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   Q4617_RS07035 Genome accession   NZ_CP131470
Coordinates   1396532..1397239 (-) Length   235 a.a.
NCBI ID   WP_004915082.1    Uniprot ID   A0A8I0S549
Organism   Acinetobacter junii strain SC22     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1391532..1402239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4617_RS07015 (Q4617_07015) - 1391984..1393203 (+) 1220 WP_100833221.1 IS3 family transposase -
  Q4617_RS07020 (Q4617_07020) - 1393250..1393765 (+) 516 Protein_1356 allophanate hydrolase -
  Q4617_RS07025 (Q4617_07025) - 1393766..1395496 (+) 1731 WP_112986829.1 biotin carboxylase N-terminal domain-containing protein -
  Q4617_RS07030 (Q4617_07030) - 1395549..1396328 (-) 780 WP_004915079.1 M48 family metallopeptidase -
  Q4617_RS07035 (Q4617_07035) crp 1396532..1397239 (-) 708 WP_004915082.1 cAMP-activated global transcriptional regulator CRP Regulator
  Q4617_RS07040 (Q4617_07040) - 1397387..1397815 (+) 429 WP_004953612.1 OsmC family protein -
  Q4617_RS07045 (Q4617_07045) - 1397861..1398661 (-) 801 WP_112986830.1 M23 family metallopeptidase -
  Q4617_RS07050 (Q4617_07050) clpB 1398923..1401502 (+) 2580 WP_004953616.1 ATP-dependent chaperone ClpB -
  Q4617_RS07055 (Q4617_07055) - 1401667..1402089 (+) 423 WP_112986831.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26613.24 Da        Isoelectric Point: 4.7528

>NTDB_id=862554 Q4617_RS07035 WP_004915082.1 1396532..1397239(-) (crp) [Acinetobacter junii strain SC22]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEENAFTEEEFDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=862554 Q4617_RS07035 WP_004915082.1 1396532..1397239(-) (crp) [Acinetobacter junii strain SC22]
ATGACTTCAAATTTTTCACAGCTTAGCACTGATGCTTTATCACCAGGTCAATTACCTGAATCTGTTAAAGCCTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCGGTGTCAATTATTTTACGTGAAGATGATGAACGTGAGATTGTCGTTGCATATTTAAACCCTGGGGATTTC
TTTGGCGAAATGGGTCTTTTTGAGAAGAACCCACAACGTACTGCGGAAGTAAGAACTCGTGATGTTTGTGAAATCGCTGA
GATTTCATATGACAACTTCCACGAATTAAGCAAACAATATCCTGATTTGAGCTACGCGGTATTTGCTCAATTAGTTCGCC
GCTTAAAAAATACAACACGTAAAGTAACTGACCTTGCATTTATTGATGTATCTGGTCGTATTGCACGTTGTTTAATTGAT
TTATCTTCGCAACCAGAAGCAATGATCTTACCAAATGGTCGTCAAATCCGTATTACTCGCCAAGAGATTGGTCGTATTGT
CGGTTGTTCACGTGAAATGGTTGGACGTGTTCTTAAGACGCTTGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACTTCATTAGAAGAAAATGCATTTACTGAAGAAGAGTTTGACGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

96.17

100

0.962
  crp Vibrio cholerae strain A1552

47.826

88.085

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404