Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Q6H37_RS29355 Genome accession   NZ_CP131467
Coordinates   6298128..6298574 (-) Length   148 a.a.
NCBI ID   WP_007063409.1    Uniprot ID   A0AAU0NU69
Organism   Clostridium sp. JS66     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6293128..6303574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6H37_RS29330 (Q6H37_29335) rplI 6293766..6294209 (-) 444 WP_318738595.1 50S ribosomal protein L9 -
  Q6H37_RS29335 (Q6H37_29340) - 6294209..6296194 (-) 1986 WP_318738596.1 DHH family phosphoesterase -
  Q6H37_RS29340 (Q6H37_29345) - 6296210..6297193 (-) 984 WP_318738597.1 YybS family protein -
  Q6H37_RS29345 (Q6H37_29350) - 6297205..6297522 (-) 318 WP_007063411.1 MazG-like family protein -
  Q6H37_RS29350 (Q6H37_29355) rpsR 6297852..6298109 (-) 258 WP_007063410.1 30S ribosomal protein S18 -
  Q6H37_RS29355 (Q6H37_29360) ssbA 6298128..6298574 (-) 447 WP_007063409.1 single-stranded DNA-binding protein Machinery gene
  Q6H37_RS29360 (Q6H37_29365) rpsF 6298586..6298873 (-) 288 WP_007063408.1 30S ribosomal protein S6 -
  Q6H37_RS29365 (Q6H37_29370) - 6298968..6299171 (-) 204 WP_318738598.1 DUF951 domain-containing protein -
  Q6H37_RS29370 (Q6H37_29375) - 6299176..6300048 (-) 873 WP_318738599.1 mechanosensitive ion channel family protein -
  Q6H37_RS29375 (Q6H37_29380) - 6300064..6300315 (-) 252 WP_318738600.1 DUF3343 domain-containing protein -
  Q6H37_RS29380 (Q6H37_29385) ytvI 6300685..6301740 (+) 1056 WP_318738601.1 sporulation integral membrane protein YtvI -
  Q6H37_RS29385 (Q6H37_29390) yyaC 6301854..6302459 (+) 606 WP_318738602.1 spore protease YyaC -
  Q6H37_RS29390 (Q6H37_29395) - 6302483..6302737 (-) 255 WP_318738603.1 YkuS family protein -
  Q6H37_RS29395 (Q6H37_29400) - 6302795..6303295 (-) 501 WP_318738604.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16270.13 Da        Isoelectric Point: 4.6708

>NTDB_id=862515 Q6H37_RS29355 WP_007063409.1 6298128..6298574(-) (ssbA) [Clostridium sp. JS66]
MNKVVLIGRLTKDPELKFTPGNGTAVATFTLAVDRKFSRDGQKEADFIPIVVWGKQAESTANYMSKGKLMGVCGRIQTRT
YDAKDGTRRYVTEVVADEVQFLEWGSGNRSAAPSFNEASSEEFGNTQGFNEKAYGEDITPVDDGDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=862515 Q6H37_RS29355 WP_007063409.1 6298128..6298574(-) (ssbA) [Clostridium sp. JS66]
ATGAACAAGGTTGTTTTAATTGGAAGATTAACCAAAGATCCTGAGTTAAAATTTACTCCAGGAAATGGTACAGCTGTTGC
CACCTTTACTTTAGCCGTTGATAGAAAATTTTCTAGAGATGGTCAAAAAGAAGCTGATTTTATCCCTATAGTAGTATGGG
GAAAACAAGCTGAATCTACAGCAAATTATATGAGCAAAGGTAAGCTTATGGGAGTTTGTGGTAGAATTCAAACTAGAACA
TATGATGCTAAAGACGGTACTAGAAGATATGTTACTGAAGTTGTTGCAGATGAAGTACAATTCCTTGAATGGGGAAGTGG
AAATAGATCAGCAGCACCATCATTTAACGAAGCTTCATCTGAAGAATTTGGAAATACTCAAGGCTTTAATGAAAAAGCCT
ATGGAGAGGATATCACGCCAGTAGATGATGGAGATATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.093

100

0.547
  ssb Latilactobacillus sakei subsp. sakei 23K

52.885

70.27

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.398

69.595

0.372