Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   Q5794_RS26320 Genome accession   NZ_CP130958
Coordinates   4966030..4966392 (-) Length   120 a.a.
NCBI ID   WP_192997082.1    Uniprot ID   -
Organism   Priestia megaterium strain BS2-10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4961030..4971392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5794_RS26310 (Q5794_26290) - 4961530..4964160 (+) 2631 WP_374988562.1 DEAD/DEAH box helicase -
  Q5794_RS26315 (Q5794_26295) - 4964459..4965505 (+) 1047 WP_215054843.1 LysM peptidoglycan-binding domain-containing protein -
  Q5794_RS26320 (Q5794_26300) ssbB 4966030..4966392 (-) 363 WP_192997082.1 single-stranded DNA-binding protein Machinery gene
  Q5794_RS26325 (Q5794_26305) - 4966489..4966926 (+) 438 WP_014457773.1 YwpF-like family protein -
  Q5794_RS26330 (Q5794_26310) - 4967450..4967872 (+) 423 WP_025752508.1 helix-turn-helix domain-containing protein -
  Q5794_RS26335 (Q5794_26315) fabZ 4967900..4968334 (-) 435 WP_215054844.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Q5794_RS26340 (Q5794_26320) - 4968418..4969239 (-) 822 WP_374988563.1 flagellar hook-basal body protein -
  Q5794_RS26345 (Q5794_26325) - 4969263..4970087 (-) 825 WP_215054846.1 flagellar hook-basal body protein -
  Q5794_RS26350 (Q5794_26330) - 4970202..4971203 (-) 1002 WP_013059791.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13398.02 Da        Isoelectric Point: 6.4632

>NTDB_id=862348 Q5794_RS26320 WP_192997082.1 4966030..4966392(-) (ssbB) [Priestia megaterium strain BS2-10]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGNPSGSSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=862348 Q5794_RS26320 WP_192997082.1 4966030..4966392(-) (ssbB) [Priestia megaterium strain BS2-10]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTCGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAACCC
ATCCGGTTCTTCTTCATTTGATTCAAATCAGCAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.879

89.167

0.525
  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.252

85.833

0.5