Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   Q6H40_RS01600 Genome accession   NZ_CP130921
Coordinates   340949..341767 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 2023CK-00423     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335949..346767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6H40_RS01565 (Q6H40_01565) - 336532..336661 (-) 130 Protein_298 hypothetical protein -
  Q6H40_RS01570 (Q6H40_01570) rpoZ 336700..336978 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  Q6H40_RS01575 (Q6H40_01575) gmk 337051..337680 (-) 630 WP_000015937.1 guanylate kinase -
  Q6H40_RS01580 (Q6H40_01580) ispH 337803..338753 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q6H40_RS01585 (Q6H40_01585) fimU 338923..339396 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6H40_RS01590 (Q6H40_01590) pilV 339390..339950 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  Q6H40_RS01595 (Q6H40_01595) pilW 339951..340952 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  Q6H40_RS01600 (Q6H40_01600) pilX 340949..341767 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6H40_RS01605 (Q6H40_01605) pilY1 341779..345633 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  Q6H40_RS01610 (Q6H40_01610) pilY2 345646..346128 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  Q6H40_RS01615 (Q6H40_01615) pilE 346125..346550 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=862178 Q6H40_RS01600 WP_000149374.1 340949..341767(+) (pilX) [Acinetobacter baumannii strain 2023CK-00423]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=862178 Q6H40_RS01600 WP_000149374.1 340949..341767(+) (pilX) [Acinetobacter baumannii strain 2023CK-00423]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993