Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   WCU24_RS09730 Genome accession   NZ_CP147619
Coordinates   2040556..2040885 (+) Length   109 a.a.
NCBI ID   WP_034075771.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain GN05356     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2035556..2045885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU24_RS09715 (WCU24_09715) - 2036171..2037133 (+) 963 WP_016253165.1 SDR family oxidoreductase -
  WCU24_RS09720 (WCU24_09720) - 2037133..2038170 (+) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  WCU24_RS09725 (WCU24_09725) - 2038368..2040365 (+) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  WCU24_RS09730 (WCU24_09730) comEA 2040556..2040885 (+) 330 WP_034075771.1 ComEA family DNA-binding protein Machinery gene
  WCU24_RS09740 (WCU24_09740) - 2041103..2042299 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  WCU24_RS09745 (WCU24_09745) uvrB 2042487..2044499 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11323.25 Da        Isoelectric Point: 8.0459

>NTDB_id=862121 WCU24_RS09730 WP_034075771.1 2040556..2040885(+) (comEA) [Pseudomonas aeruginosa strain GN05356]
MHLIKSALLLILFACLPFSASAAPAAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=862121 WCU24_RS09730 WP_034075771.1 2040556..2040885(+) (comEA) [Pseudomonas aeruginosa strain GN05356]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGCCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

39.091

100

0.394
  comEA Vibrio cholerae strain A1552

39.091

100

0.394
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385