Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   Q6381_RS02345 Genome accession   NZ_CP130898
Coordinates   450950..451423 (+) Length   157 a.a.
NCBI ID   WP_025455870.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ196610     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445950..456423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6381_RS02320 (Q6381_02320) dnaB 446512..447918 (+) 1407 WP_047917169.1 replicative DNA helicase -
  Q6381_RS02325 (Q6381_02325) pilH 448073..448738 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6381_RS02330 (Q6381_02330) pilV 448770..449381 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  Q6381_RS02335 (Q6381_02335) pilJ 449378..450358 (+) 981 WP_304674314.1 PilW family protein Machinery gene
  Q6381_RS02340 (Q6381_02340) pilK 450337..450948 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6381_RS02345 (Q6381_02345) pilL 450950..451423 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  Q6381_RS02350 (Q6381_02350) - 451493..451801 (-) 309 WP_010951048.1 AzlD family protein -
  Q6381_RS02355 (Q6381_02355) - 451798..452505 (-) 708 Protein_459 AzlC family ABC transporter permease -
  Q6381_RS02360 (Q6381_02360) dut 452671..453123 (+) 453 WP_103195211.1 dUTP diphosphatase -
  Q6381_RS02365 (Q6381_02365) dapC 453201..454388 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  Q6381_RS02370 (Q6381_02370) yaaA 454699..455478 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17555.36 Da        Isoelectric Point: 9.4067

>NTDB_id=862016 Q6381_RS02345 WP_025455870.1 450950..451423(+) (pilL) [Neisseria gonorrhoeae strain NJ196610]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=862016 Q6381_RS02345 WP_025455870.1 450950..451423(+) (pilL) [Neisseria gonorrhoeae strain NJ196610]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

100

100

1
  pilX Neisseria meningitidis 8013

85.987

100

0.86