Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   Q6381_RS02335 Genome accession   NZ_CP130898
Coordinates   449378..450358 (+) Length   326 a.a.
NCBI ID   WP_304674314.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ196610     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 444378..455358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6381_RS02310 (Q6381_02310) - 445026..445535 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q6381_RS02315 (Q6381_02315) - 445767..446348 (-) 582 WP_047923823.1 superoxide dismutase -
  Q6381_RS02320 (Q6381_02320) dnaB 446512..447918 (+) 1407 WP_047917169.1 replicative DNA helicase -
  Q6381_RS02325 (Q6381_02325) pilH 448073..448738 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6381_RS02330 (Q6381_02330) pilV 448770..449381 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  Q6381_RS02335 (Q6381_02335) pilJ 449378..450358 (+) 981 WP_304674314.1 PilW family protein Machinery gene
  Q6381_RS02340 (Q6381_02340) pilK 450337..450948 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6381_RS02345 (Q6381_02345) pilL 450950..451423 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  Q6381_RS02350 (Q6381_02350) - 451493..451801 (-) 309 WP_010951048.1 AzlD family protein -
  Q6381_RS02355 (Q6381_02355) - 451798..452505 (-) 708 Protein_459 AzlC family ABC transporter permease -
  Q6381_RS02360 (Q6381_02360) dut 452671..453123 (+) 453 WP_103195211.1 dUTP diphosphatase -
  Q6381_RS02365 (Q6381_02365) dapC 453201..454388 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -

Sequence


Protein


Download         Length: 326 a.a.        Molecular weight: 35921.06 Da        Isoelectric Point: 9.8167

>NTDB_id=862014 Q6381_RS02335 WP_304674314.1 449378..450358(+) (pilJ) [Neisseria gonorrhoeae strain NJ196610]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDVANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTKGDIVDSSNQTQSNLAKPGAKQENPLFSLKRSSMDKQLIPVAESIDIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGRFGNNEESLFRFQLDDKGKWGNPQLLV
KKVKRMDVRYIYVSGCPEDEDAGKEEKFRYTNKFDKSKNAVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNV
CANRTL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=862014 Q6381_RS02335 WP_304674314.1 449378..450358(+) (pilJ) [Neisseria gonorrhoeae strain NJ196610]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGTGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGGCGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCTTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCAGCATGGATAAACAACTGATTCCCGTTGCTGAATCCATAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
GGTTTGGCAATAATGAGGAAAGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTG
AAAAAGGTTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAAAA
ATTCAGATATACGAATAAATTCGACAAATCCAAAAATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCC
TTAATGCCAAGATTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTA
TGCGCAAACAGAACACTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

76.292

100

0.77