Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   Q6385_RS02345 Genome accession   NZ_CP130893
Coordinates   449346..449957 (+) Length   203 a.a.
NCBI ID   WP_012503481.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1914646     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444346..454957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6385_RS02320 (Q6385_02320) - 444702..445283 (-) 582 WP_003690895.1 superoxide dismutase -
  Q6385_RS02325 (Q6385_02325) dnaB 445446..446849 (+) 1404 WP_050169725.1 replicative DNA helicase -
  Q6385_RS02330 (Q6385_02330) pilH 447106..447768 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6385_RS02335 (Q6385_02335) pilI 447800..448411 (+) 612 WP_139591885.1 type IV pilus modification protein PilV Machinery gene
  Q6385_RS02340 (Q6385_02340) pilJ 448408..449367 (+) 960 WP_050169726.1 PilW family protein Machinery gene
  Q6385_RS02345 (Q6385_02345) pilK 449346..449957 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6385_RS02350 (Q6385_02350) pilL 449959..450432 (+) 474 WP_176549690.1 PilX family type IV pilin Machinery gene
  Q6385_RS02355 (Q6385_02355) - 450502..450810 (-) 309 WP_003706588.1 AzlD family protein -
  Q6385_RS02360 (Q6385_02360) - 450807..451518 (-) 712 Protein_460 AzlC family ABC transporter permease -
  Q6385_RS02365 (Q6385_02365) dut 451684..452136 (+) 453 WP_003701071.1 dUTP diphosphatase -
  Q6385_RS02370 (Q6385_02370) dapC 452208..453395 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  Q6385_RS02375 (Q6385_02375) yaaA 453551..454330 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22021.91 Da        Isoelectric Point: 8.0862

>NTDB_id=861781 Q6385_RS02345 WP_012503481.1 449346..449957(+) (pilK) [Neisseria gonorrhoeae strain NJ1914646]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=861781 Q6385_RS02345 WP_012503481.1 449346..449957(+) (pilK) [Neisseria gonorrhoeae strain NJ1914646]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

96.059

100

0.961