Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q6385_RS02330 Genome accession   NZ_CP130893
Coordinates   447106..447768 (+) Length   220 a.a.
NCBI ID   WP_041421240.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ1914646     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 442106..452768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6385_RS02305 (Q6385_02305) cysT 442286..443115 (-) 830 Protein_449 sulfate ABC transporter permease subunit CysT -
  Q6385_RS02310 (Q6385_02310) - 443301..443633 (+) 333 WP_003687908.1 hypothetical protein -
  Q6385_RS02315 (Q6385_02315) - 443963..444472 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q6385_RS02320 (Q6385_02320) - 444702..445283 (-) 582 WP_003690895.1 superoxide dismutase -
  Q6385_RS02325 (Q6385_02325) dnaB 445446..446849 (+) 1404 WP_050169725.1 replicative DNA helicase -
  Q6385_RS02330 (Q6385_02330) pilH 447106..447768 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6385_RS02335 (Q6385_02335) pilI 447800..448411 (+) 612 WP_139591885.1 type IV pilus modification protein PilV Machinery gene
  Q6385_RS02340 (Q6385_02340) pilJ 448408..449367 (+) 960 WP_050169726.1 PilW family protein Machinery gene
  Q6385_RS02345 (Q6385_02345) pilK 449346..449957 (+) 612 WP_012503481.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6385_RS02350 (Q6385_02350) pilL 449959..450432 (+) 474 WP_176549690.1 PilX family type IV pilin Machinery gene
  Q6385_RS02355 (Q6385_02355) - 450502..450810 (-) 309 WP_003706588.1 AzlD family protein -
  Q6385_RS02360 (Q6385_02360) - 450807..451518 (-) 712 Protein_460 AzlC family ABC transporter permease -
  Q6385_RS02365 (Q6385_02365) dut 451684..452136 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24496.91 Da        Isoelectric Point: 9.6166

>NTDB_id=861778 Q6385_RS02330 WP_041421240.1 447106..447768(+) (pilH) [Neisseria gonorrhoeae strain NJ1914646]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYTFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKNNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=861778 Q6385_RS02330 WP_041421240.1 447106..447768(+) (pilH) [Neisseria gonorrhoeae strain NJ1914646]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACACCTTCAATCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

95.909

100

0.959