Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q6379_RS09430 Genome accession   NZ_CP130892
Coordinates   1786129..1786560 (+) Length   143 a.a.
NCBI ID   WP_050170900.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ204705     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1781129..1791560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6379_RS09395 (Q6379_09395) lpxC 1781474..1782397 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q6379_RS09400 (Q6379_09400) pilE 1782504..1782935 (+) 432 WP_050170900.1 pilin Machinery gene
  Q6379_RS09405 (Q6379_09405) - 1783058..1783462 (+) 405 Protein_1817 pilin -
  Q6379_RS09410 (Q6379_09410) - 1783481..1783858 (+) 378 Protein_1818 pilin -
  Q6379_RS09415 (Q6379_09415) - 1783972..1784385 (+) 414 Protein_1819 pilin -
  Q6379_RS09425 (Q6379_09425) lpxC 1785099..1786022 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q6379_RS09430 (Q6379_09430) pilE 1786129..1786560 (+) 432 WP_050170900.1 pilin Machinery gene
  Q6379_RS09435 (Q6379_09435) - 1786683..1786801 (+) 119 Protein_1822 pilin -
  Q6379_RS09440 (Q6379_09440) - 1787104..1787247 (+) 144 WP_047925941.1 hypothetical protein -
  Q6379_RS09445 (Q6379_09445) - 1787617..1788128 (+) 512 Protein_1824 pilin -
  Q6379_RS09450 (Q6379_09450) - 1788625..1789449 (+) 825 WP_304672968.1 opacity family porin -
  Q6379_RS09455 (Q6379_09455) - 1789463..1789636 (+) 174 WP_164823228.1 hypothetical protein -
  Q6379_RS09460 (Q6379_09460) pilA 1789714..1790967 (-) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15472.32 Da        Isoelectric Point: 9.4144

>NTDB_id=861756 Q6379_RS09430 WP_050170900.1 1786129..1786560(+) (pilE) [Neisseria gonorrhoeae strain NJ204705]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGIWPKDNTSAGVASSSSIKGKYVKEVEVKNGVVTAEMKSDGVNKEIK
GKRLSLWARRENGSVKWFCGQPVKRDAGAKTGADDVKADGKDTDKINTKHLPSTCRDKASDAT

Nucleotide


Download         Length: 432 bp        

>NTDB_id=861756 Q6379_RS09430 WP_050170900.1 1786129..1786560(+) (pilE) [Neisseria gonorrhoeae strain NJ204705]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCATATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCTTCTTCATCAATCAAAGGCA
AATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCGAAATGAAATCAGACGGCGTAAACAAAGAAATCAAA
GGCAAAAGACTCTCCCTGTGGGCCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGC
CGGCGCCAAAACCGGCGCCGACGACGTCAAAGCCGACGGCAAAGACACCGACAAAATCAACACCAAGCACCTGCCGTCAA
CCTGCCGCGATAAGGCATCTGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.528

100

0.72
  pilE Neisseria gonorrhoeae strain FA1090

67.606

99.301

0.671