Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   Q6379_RS09460 Genome accession   NZ_CP130892
Coordinates   1789714..1790967 (-) Length   417 a.a.
NCBI ID   WP_003696286.1    Uniprot ID   A0AB74ETB0
Organism   Neisseria gonorrhoeae strain NJ204705     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1784714..1795967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6379_RS09425 (Q6379_09425) lpxC 1785099..1786022 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  Q6379_RS09430 (Q6379_09430) pilE 1786129..1786560 (+) 432 WP_050170900.1 pilin Machinery gene
  Q6379_RS09435 (Q6379_09435) - 1786683..1786801 (+) 119 Protein_1822 pilin -
  Q6379_RS09440 (Q6379_09440) - 1787104..1787247 (+) 144 WP_047925941.1 hypothetical protein -
  Q6379_RS09445 (Q6379_09445) - 1787617..1788128 (+) 512 Protein_1824 pilin -
  Q6379_RS09450 (Q6379_09450) - 1788625..1789449 (+) 825 WP_304672968.1 opacity family porin -
  Q6379_RS09455 (Q6379_09455) - 1789463..1789636 (+) 174 WP_164823228.1 hypothetical protein -
  Q6379_RS09460 (Q6379_09460) pilA 1789714..1790967 (-) 1254 WP_003696286.1 signal recognition particle-docking protein FtsY Machinery gene
  Q6379_RS09465 (Q6379_09465) msrAB 1791113..1792681 (+) 1569 WP_003687002.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  Q6379_RS09470 (Q6379_09470) - 1792765..1793247 (-) 483 WP_003694396.1 CinA family protein -
  Q6379_RS09475 (Q6379_09475) - 1793274..1794122 (-) 849 WP_003687000.1 mechanosensitive ion channel family protein -
  Q6379_RS09480 (Q6379_09480) - 1794216..1795217 (-) 1002 WP_003686999.1 thiamine ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 44331.70 Da        Isoelectric Point: 4.8647

>NTDB_id=861757 Q6379_RS09460 WP_003696286.1 1789714..1790967(-) (pilA) [Neisseria gonorrhoeae strain NJ204705]
MFSFFRRKKKQETPALEEAQVQETAAKVESEVAQIVGNIKEDVESLAESVKGRAESAVETVSGAVEQVKETVAEMPSEAG
EAAERVESAKEAVAETVGEAVGQVQEAVATTEEHKLGWAARLKQGLAKSRDKMAKSLAGVFGGGQIGEDLYEELETVLIT
GDMGMEATEYLMKDVRGRVSLKGLKDGNELRGALKEALYDLIKPLEKPLVLPETKEPFVIMLAGINGAGKTTSIGKLAKY
FQAQGKSVLLAAGDTFRAAAREQLQAWGGRNNVTVISQTTGDSAAVCFDAVQAAKARGIDIVLADTAGRLPTQLHLMEEI
KKVKRVLQKAIPGAPHEIIVVLDANIGQNAVNQVKAFDDALGLTGLIVTKLDGTAKGGILAALASDRPVPVRYIGVGEGI
DDLRPFDARAFVDALLD

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=861757 Q6379_RS09460 WP_003696286.1 1789714..1790967(-) (pilA) [Neisseria gonorrhoeae strain NJ204705]
ATGTTCAGCTTCTTCCGTCGCAAGAAAAAACAGGAAACGCCGGCTCTCGAGGAGGCCCAAGTTCAGGAAACCGCAGCAAA
AGTAGAATCTGAAGTTGCTCAAATAGTTGGAAATATTAAAGAAGATGTCGAATCTTTAGCAGAAAGCGTCAAAGGGCGGG
CCGAATCTGCCGTTGAAACCGTCAGCGGTGCGGTTGAACAGGTAAAGGAAACCGTTGCCGAGATGCCGTCTGAAGCAGGG
GAAGCGGCGGAACGCGTTGAATCCGCAAAAGAAGCTGTTGCCGAAACCGTCGGCGAGGCTGTCGGGCAAGTTCAAGAAGC
CGTTGCGACAACTGAAGAACACAAGCTCGGTTGGGCTGCGCGTTTGAAACAAGGCTTGGCCAAATCACGCGACAAAATGG
CGAAATCGCTGGCCGGCGTGTTCGGCGGCGGACAAATCGGCGAGGATTTGTACGAAGAGCTGGAAACCGTGCTGATTACC
GGCGATATGGGCATGGAGGCCACCGAATACCTGATGAAAGACGTGCGCGGCCGCGTCAGCCTCAAAGGGCTGAAAGACGG
CAACGAATTGCGCGGCGCGTTGAAAGAAGCCTTGTACGACCTGATTAAGCCGTTGGAAAAACCGCTGGTCTTGCCCGAAA
CTAAAGAGCCTTTCGTGATTATGCTTGCCGGTATCAACGGCGCGGGCAAAACCACGTCTATCGGCAAACTCGCCAAATAT
TTCCAAGCGCAGGGCAAATCCGTATTGCTGGCGGCGGGCGATACCTTCCGCGCCGCCGCCCGTGAGCAGCTTCAGGCTTG
GGGCGGGCGCAACAATGTAACCGTCATTTCACAAACCACGGGCGATTCCGCCGCCGTGTGCTTCGATGCCGTCCAAGCCG
CCAAAGCGCGCGGGATCGACATCGTGCTTGCCGACACCGCCGGCCGCCTGCCCACGCAGCTTCATTTGATGGAAGAAATC
AAAAAAGTGAAGCGCGTGCTGCAAAAAGCCATTCCCGGCGCGCCGCACGAAATTATCGTCGTACTCGATGCCAATATCGG
GCAAAACGCCGTCAACCAAGTCAAAGCCTTTGACGACGCATTGGGGCTGACGGGGCTTATCGTTACCAAACTCGACGGCA
CGGCAAAAGGCGGCATCCTCGCCGCGCTTGCTTCCGACCGCCCCGTCCCCGTCCGCTACATCGGCGTGGGCGAAGGCATA
GACGACCTGCGCCCGTTTGACGCGCGCGCGTTTGTGGACGCACTGCTGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(217-416)

SRP54-type protein, helical bundle domain (SRP54_N)

(132-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

100

100

1