Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   Q6384_RS00865 Genome accession   NZ_CP130890
Coordinates   159691..160302 (-) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208756     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 154691..165302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6384_RS00835 (Q6384_00835) yaaA 155158..155937 (-) 780 WP_003706583.1 peroxide stress protein YaaA -
  Q6384_RS00840 (Q6384_00840) dapC 156248..157435 (-) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  Q6384_RS00845 (Q6384_00845) dut 157513..157965 (-) 453 WP_103195211.1 dUTP diphosphatase -
  Q6384_RS00850 (Q6384_00850) - 158131..158838 (+) 708 Protein_164 AzlC family ABC transporter permease -
  Q6384_RS00855 (Q6384_00855) - 158835..159143 (+) 309 WP_010951048.1 AzlD family protein -
  Q6384_RS00860 (Q6384_00860) pilL 159213..159689 (-) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  Q6384_RS00865 (Q6384_00865) pilK 159691..160302 (-) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6384_RS00870 (Q6384_00870) pilJ 160281..161261 (-) 981 WP_304674300.1 PilW family protein Machinery gene
  Q6384_RS00875 (Q6384_00875) pilV 161258..161869 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  Q6384_RS00880 (Q6384_00880) pilH 161901..162566 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6384_RS00885 (Q6384_00885) dnaB 162721..164127 (-) 1407 WP_047917169.1 replicative DNA helicase -
  Q6384_RS00890 (Q6384_00890) - 164291..164872 (+) 582 WP_047923823.1 superoxide dismutase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=861626 Q6384_RS00865 WP_003687918.1 159691..160302(-) (pilK) [Neisseria gonorrhoeae strain NJ208756]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=861626 Q6384_RS00865 WP_003687918.1 159691..160302(-) (pilK) [Neisseria gonorrhoeae strain NJ208756]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1