Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   WCU44_RS26880 Genome accession   NZ_CP147601
Coordinates   5800320..5800844 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain GN05219     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5795320..5805844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU44_RS26865 (WCU44_26865) aroB 5796436..5797542 (-) 1107 WP_019726985.1 3-dehydroquinate synthase -
  WCU44_RS26870 (WCU44_26870) aroK 5797592..5798110 (-) 519 WP_003095833.1 shikimate kinase AroK -
  WCU44_RS26875 (WCU44_26875) pilQ 5798122..5800266 (-) 2145 WP_338908047.1 type 4a pilus secretin PilQ Machinery gene
  WCU44_RS26880 (WCU44_26880) comL/pilP 5800320..5800844 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  WCU44_RS26885 (WCU44_26885) pilO 5800841..5801464 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  WCU44_RS26890 (WCU44_26890) pilN 5801461..5802057 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  WCU44_RS26895 (WCU44_26895) pilM 5802057..5803121 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  WCU44_RS26900 (WCU44_26900) - 5803306..5805777 (+) 2472 WP_019726988.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=861627 WCU44_RS26880 WP_003095836.1 5800320..5800844(-) (comL/pilP) [Pseudomonas aeruginosa strain GN05219]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=861627 WCU44_RS26880 WP_003095836.1 5800320..5800844(-) (comL/pilP) [Pseudomonas aeruginosa strain GN05219]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362