Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   Q6384_RS00880 Genome accession   NZ_CP130890
Coordinates   161901..162566 (-) Length   221 a.a.
NCBI ID   WP_047918678.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208756     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 156901..167566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6384_RS00845 (Q6384_00845) dut 157513..157965 (-) 453 WP_103195211.1 dUTP diphosphatase -
  Q6384_RS00850 (Q6384_00850) - 158131..158838 (+) 708 Protein_164 AzlC family ABC transporter permease -
  Q6384_RS00855 (Q6384_00855) - 158835..159143 (+) 309 WP_010951048.1 AzlD family protein -
  Q6384_RS00860 (Q6384_00860) pilL 159213..159689 (-) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  Q6384_RS00865 (Q6384_00865) pilK 159691..160302 (-) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q6384_RS00870 (Q6384_00870) pilJ 160281..161261 (-) 981 WP_304674300.1 PilW family protein Machinery gene
  Q6384_RS00875 (Q6384_00875) pilV 161258..161869 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  Q6384_RS00880 (Q6384_00880) pilH 161901..162566 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q6384_RS00885 (Q6384_00885) dnaB 162721..164127 (-) 1407 WP_047917169.1 replicative DNA helicase -
  Q6384_RS00890 (Q6384_00890) - 164291..164872 (+) 582 WP_047923823.1 superoxide dismutase -
  Q6384_RS00895 (Q6384_00895) - 165104..165613 (-) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  Q6384_RS00900 (Q6384_00900) - 165944..166276 (-) 333 WP_003687908.1 hypothetical protein -
  Q6384_RS00905 (Q6384_00905) cysT 166462..167291 (+) 830 Protein_175 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24613.96 Da        Isoelectric Point: 8.6140

>NTDB_id=861629 Q6384_RS00880 WP_047918678.1 161901..162566(-) (pilH) [Neisseria gonorrhoeae strain NJ208756]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQIANLLRFSRGEAVRLNLPVYICPAQVKKDGTVD
NQCDFGKKEQGMLAFGDKNDNKAYDGDAADVFLRNVVLNDDIKDKRINYTFNHIAFGSSQPTADRVVWTFNQNGTFGYTK
DQHLASTSSFFYSDGYIQIVLTDARAVSDADRKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=861629 Q6384_RS00880 WP_047918678.1 161901..162566(-) (pilH) [Neisseria gonorrhoeae strain NJ208756]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGCCCAAGTTAAAAAAGACGGTACGGTCGAC
AACCAATGCGACTTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGTAACGTGGTATTGAATGATGATATCAAGGATAAGCGGATTAATTACACCTTCAATCATA
TCGCTTTCGGTTCGTCTCAGCCGACCGCCGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATACGAAA
GACCAGCATCTTGCAAGCACATCCAGCTTTTTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAGGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

86.878

100

0.869