Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   WCU44_RS26890 Genome accession   NZ_CP147601
Coordinates   5801461..5802057 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain GN05219     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5796461..5807057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WCU44_RS26870 (WCU44_26870) aroK 5797592..5798110 (-) 519 WP_003095833.1 shikimate kinase AroK -
  WCU44_RS26875 (WCU44_26875) pilQ 5798122..5800266 (-) 2145 WP_338908047.1 type 4a pilus secretin PilQ Machinery gene
  WCU44_RS26880 (WCU44_26880) comL/pilP 5800320..5800844 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  WCU44_RS26885 (WCU44_26885) pilO 5800841..5801464 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  WCU44_RS26890 (WCU44_26890) pilN 5801461..5802057 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  WCU44_RS26895 (WCU44_26895) pilM 5802057..5803121 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  WCU44_RS26900 (WCU44_26900) - 5803306..5805777 (+) 2472 WP_019726988.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=861629 WCU44_RS26890 WP_003095839.1 5801461..5802057(-) (pilN) [Pseudomonas aeruginosa strain GN05219]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=861629 WCU44_RS26890 WP_003095839.1 5801461..5802057(-) (pilN) [Pseudomonas aeruginosa strain GN05219]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369