Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Q5Z11_RS15450 Genome accession   NZ_CP130832
Coordinates   3457171..3458586 (+) Length   471 a.a.
NCBI ID   WP_303747213.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 610A2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3452171..3463586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5Z11_RS15430 - 3452216..3452596 (-) 381 WP_303747211.1 endonuclease domain-containing protein -
  Q5Z11_RS15435 sucD 3453160..3454035 (-) 876 WP_012511927.1 succinate--CoA ligase subunit alpha -
  Q5Z11_RS15440 sucC 3454057..3455226 (-) 1170 WP_057629765.1 ADP-forming succinate--CoA ligase subunit beta -
  Q5Z11_RS15445 - 3455487..3457112 (+) 1626 WP_303747212.1 PAS domain-containing sensor histidine kinase -
  Q5Z11_RS15450 pilR 3457171..3458586 (+) 1416 WP_303747213.1 sigma-54 dependent transcriptional regulator Regulator
  Q5Z11_RS15455 pilB 3458727..3460457 (-) 1731 WP_303747214.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q5Z11_RS15460 - 3460624..3461406 (-) 783 WP_303747215.1 sterol desaturase family protein -
  Q5Z11_RS20755 - 3461551..3461895 (-) 345 WP_405051613.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q5Z11_RS15470 - 3462350..3462449 (-) 100 Protein_3041 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 50959.24 Da        Isoelectric Point: 5.8868

>NTDB_id=861500 Q5Z11_RS15450 WP_303747213.1 3457171..3458586(+) (pilR) [Stenotrophomonas sp. 610A2]
MNATHSALIVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNHFDLCLTDMRLPDGNGIELVTEITRDHPATPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDINVLRGLVRHAIELNNEARPSTPPPPESATRLLGGSPAMDELRATISKVARS
QAPVYILGESGVGKELVARTIHDQGARAAGPFIPVNCGAIPSELMESEFFGHRKGSFTGAHADKPGLFQAANGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGAATEVTVDVRILSATHKDLGTLVQDGRFRHDLYYRINVIELRVPPLRERRGDLPQ
LASTILNRLAQAQGQKPPQLAASALEALDAYSFPGNVRELENILERSLALADSDCIDASDLRLPQPQSAAQRTATSTDSP
AIAASATVAVQEAVVDIDPASSALPSYIEQMERTVIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=861500 Q5Z11_RS15450 WP_303747213.1 3457171..3458586(+) (pilR) [Stenotrophomonas sp. 610A2]
ATGAACGCAACACACAGCGCCCTGATCGTCGATGACGAACGCGACATCCGCGAACTCCTGGTCCTCACCCTCGGCCGGAT
GGGCCTGCGGATCAGCACCGCCGCCAACCTCGCCGAAGCCCGGGAACTGCTGGCCAGCAACCATTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAATGGCATCGAGTTGGTAACCGAGATAACCCGCGACCATCCCGCCACCCCGGTGGCG
ATGATCACTGCCTTTGGCAGCATGGATCTGGCAGTGGAAGCACTGAAAGCCGGCGCTTTCGACTTCGTCAGCAAGCCGGT
GGACATCAATGTGCTGCGCGGCCTGGTCAGGCACGCCATTGAACTGAACAACGAAGCCCGCCCCAGCACCCCGCCACCAC
CGGAAAGCGCCACCCGCCTGCTTGGCGGCTCACCGGCCATGGATGAGCTGCGGGCAACCATCAGCAAGGTCGCCCGCAGC
CAGGCGCCGGTCTACATCCTGGGTGAATCCGGCGTCGGCAAGGAACTGGTCGCCCGCACCATCCACGATCAGGGCGCGCG
CGCGGCTGGCCCCTTCATCCCGGTCAACTGCGGCGCCATCCCCAGCGAGCTGATGGAAAGCGAGTTCTTCGGCCATCGCA
AGGGCAGCTTCACCGGCGCCCATGCCGACAAACCCGGCCTGTTCCAGGCAGCCAATGGCGGCACCCTGTTCCTTGATGAA
GTGGCCGAGTTGCCACTGCAGATGCAGGTAAAGCTGCTGCGGGCAATCCAGGAAAAATCGGTGCGCCCGGTCGGTGCGGC
CACCGAGGTCACCGTGGATGTGCGCATCCTCTCGGCGACGCACAAGGATCTTGGCACCCTGGTCCAGGACGGGCGTTTCC
GCCACGACCTGTACTACCGCATCAATGTCATCGAATTGCGGGTACCACCGCTGCGCGAGCGCCGCGGCGACCTGCCGCAA
CTGGCGAGCACCATCCTGAACCGCCTGGCGCAGGCGCAGGGACAAAAGCCACCGCAACTGGCAGCTTCGGCACTGGAGGC
CTTGGACGCCTACTCCTTCCCCGGCAATGTGCGCGAACTGGAAAACATTCTGGAGCGTTCACTGGCCCTGGCGGACAGCG
ACTGCATCGACGCCAGTGACCTGCGCTTGCCGCAGCCTCAGAGTGCAGCCCAACGCACTGCGACCAGCACTGACAGTCCT
GCCATTGCGGCCAGTGCGACCGTCGCCGTGCAGGAAGCGGTCGTCGATATCGACCCCGCCAGTTCCGCCCTGCCCTCTTA
CATCGAGCAGATGGAGCGCACGGTGATCCAGAAGGCACTCGAAGAGAATCGCTGGAACAAGACCAAGACCGCCGCCCAGC
TAGGCATCACCTTCCGCGCCCTGCGTTACAAGCTGAAAAAGCTGGGCATGGAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.242

99.151

0.607
  pilR Acinetobacter baumannii strain A118

48.06

98.514

0.473