Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   Q5H80_RS12995 Genome accession   NZ_CP130748
Coordinates   2918097..2918729 (+) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio sp. SNU_ST1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2913097..2923729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5H80_RS12975 (Q5H80_12975) - 2914862..2915332 (+) 471 WP_009848923.1 TIGR02444 family protein -
  Q5H80_RS12980 (Q5H80_12980) - 2915609..2916601 (+) 993 WP_012604928.1 hydrolase -
  Q5H80_RS12985 (Q5H80_12985) - 2916696..2916908 (+) 213 WP_304565291.1 YheU family protein -
  Q5H80_RS12990 (Q5H80_12990) - 2916986..2917855 (+) 870 WP_012604929.1 phosphoribulokinase -
  Q5H80_RS12995 (Q5H80_12995) crp 2918097..2918729 (+) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  Q5H80_RS13000 (Q5H80_13000) - 2918915..2919706 (-) 792 WP_304565327.1 DUF1338 domain-containing protein -
  Q5H80_RS13005 (Q5H80_13005) astD 2919926..2921383 (-) 1458 WP_304565329.1 succinylglutamate-semialdehyde dehydrogenase -
  Q5H80_RS13010 (Q5H80_13010) astA 2921423..2922442 (-) 1020 WP_304565331.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=861311 Q5H80_RS12995 WP_004729651.1 2918097..2918729(+) (crp) [Vibrio sp. SNU_ST1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=861311 Q5H80_RS12995 WP_004729651.1 2918097..2918729(+) (crp) [Vibrio sp. SNU_ST1]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTTGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATTCTAATGCGTCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCAAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATTGTTGGTTGTTCTCGTGAGACCGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAGACCATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467