Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   Q4437_RS13385 Genome accession   NZ_CP130651
Coordinates   2868952..2869596 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain HZ     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2863952..2874596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q4437_RS13370 (Q4437_13370) - 2864436..2865881 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  Q4437_RS13375 (Q4437_13375) csrD 2865893..2867902 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  Q4437_RS13380 (Q4437_13380) ssb 2868143..2868673 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  Q4437_RS13385 (Q4437_13385) qstR 2868952..2869596 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  Q4437_RS13390 (Q4437_13390) galU 2869854..2870726 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  Q4437_RS13395 (Q4437_13395) uvrA 2870864..2873686 (+) 2823 WP_005490537.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=860924 Q4437_RS13385 WP_005480993.1 2868952..2869596(+) (qstR) [Vibrio parahaemolyticus strain HZ]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=860924 Q4437_RS13385 WP_005480993.1 2868952..2869596(+) (qstR) [Vibrio parahaemolyticus strain HZ]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAAAAAGTCGCATCGTTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTCGGCGAAGGACTGAAAGGTATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523