Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   QAD56_RS00740 Genome accession   NZ_CP130625
Coordinates   152018..153154 (+) Length   378 a.a.
NCBI ID   WP_373930970.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS08     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 147018..158154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD56_RS00705 (QAD56_00705) panD 147473..147823 (+) 351 WP_120846467.1 aspartate 1-decarboxylase -
  QAD56_RS00710 (QAD56_00710) - 147834..148127 (+) 294 WP_060870524.1 YbaB/EbfC family nucleoid-associated protein -
  QAD56_RS00715 (QAD56_00715) - 148127..149122 (+) 996 WP_373931581.1 PDZ domain-containing protein -
  QAD56_RS00720 (QAD56_00720) comB6 149128..150183 (+) 1056 WP_373930964.1 type IV secretion system protein Machinery gene
  QAD56_RS00725 (QAD56_00725) - 150199..150323 (+) 125 Protein_140 comB7 lipoprotein -
  QAD56_RS00730 (QAD56_00730) comB8 150320..151063 (+) 744 WP_373930967.1 type IV secretion system protein Machinery gene
  QAD56_RS00735 (QAD56_00735) comB9 151063..152025 (+) 963 WP_373930969.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QAD56_RS00740 (QAD56_00740) comB10 152018..153154 (+) 1137 WP_373930970.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAD56_RS00745 (QAD56_00745) - 153224..154636 (+) 1413 WP_373930971.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QAD56_RS00750 (QAD56_00750) gmd 154665..155810 (+) 1146 WP_373930973.1 GDP-mannose 4,6-dehydratase -
  QAD56_RS00755 (QAD56_00755) - 155803..156735 (+) 933 WP_373930975.1 GDP-L-fucose synthase family protein -
  QAD56_RS00760 (QAD56_00760) hypE 156986..157984 (-) 999 WP_373930977.1 hydrogenase expression/formation protein HypE -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42141.73 Da        Isoelectric Point: 9.9021

>NTDB_id=860757 QAD56_RS00740 WP_373930970.1 152018..153154(+) (comB10) [Helicobacter pylori strain BS08]
MNKWIKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEINYSREETFASPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNSLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=860757 QAD56_RS00740 WP_373930970.1 152018..153154(+) (comB10) [Helicobacter pylori strain BS08]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCATCA
AAAACCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCTAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATAAACTATTCTAGAGAAGAAACTTTTGCTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACAGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

95.238

100

0.952