Detailed information NTG0860754

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QAD56_RS00720
• Genome accession: NZ_CP130625
• Coordinates: 149128..150183 (+)
• Length: 351 a.a.
• NCBI ID: WP_373930964.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS08
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144128..155183

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAD56_RS00690 (QAD56_00690)	-	144561..144974 (+)	414	WP_001023006.1	universal stress protein	-
QAD56_RS00695 (QAD56_00695)	-	144989..145264 (+)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
QAD56_RS00700 (QAD56_00700)	-	145264..147483 (+)	2220	WP_373930962.1	AAA family ATPase	-
QAD56_RS00705 (QAD56_00705)	panD	147473..147823 (+)	351	WP_120846467.1	aspartate 1-decarboxylase	-
QAD56_RS00710 (QAD56_00710)	-	147834..148127 (+)	294	WP_060870524.1	YbaB/EbfC family nucleoid-associated protein	-
QAD56_RS00715 (QAD56_00715)	-	148127..149122 (+)	996	WP_373931581.1	PDZ domain-containing protein	-
QAD56_RS00720 (QAD56_00720)	comB6	149128..150183 (+)	1056	WP_373930964.1	type IV secretion system protein	Machinery gene
QAD56_RS00725 (QAD56_00725)	-	150199..150323 (+)	125	Protein_140	comB7 lipoprotein	-
QAD56_RS00730 (QAD56_00730)	comB8	150320..151063 (+)	744	WP_373930967.1	type IV secretion system protein	Machinery gene
QAD56_RS00735 (QAD56_00735)	comB9	151063..152025 (+)	963	WP_373930969.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAD56_RS00740 (QAD56_00740)	comB10	152018..153154 (+)	1137	WP_373930970.1	DNA type IV secretion system protein ComB10	Machinery gene
QAD56_RS00745 (QAD56_00745)	-	153224..154636 (+)	1413	WP_373930971.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39943.87 Da
• Isoelectric Point: 8.8165

>NTDB_id=860754 QAD56_RS00720 WP_373930964.1 149128..150183(+) (comB6) [Helicobacter pylori strain BS08]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASTLTEALLFVGFFTLFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=860754 QAD56_RS00720 WP_373930964.1 149128..150183(+) (comB6) [Helicobacter pylori strain BS08]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGCTAGCACGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTACGCTCTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGGGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96