Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   QAD56_RS00730 Genome accession   NZ_CP130625
Coordinates   150320..151063 (+) Length   247 a.a.
NCBI ID   WP_373930967.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS08     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145320..156063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAD56_RS00705 (QAD56_00705) panD 147473..147823 (+) 351 WP_120846467.1 aspartate 1-decarboxylase -
  QAD56_RS00710 (QAD56_00710) - 147834..148127 (+) 294 WP_060870524.1 YbaB/EbfC family nucleoid-associated protein -
  QAD56_RS00715 (QAD56_00715) - 148127..149122 (+) 996 WP_373931581.1 PDZ domain-containing protein -
  QAD56_RS00720 (QAD56_00720) comB6 149128..150183 (+) 1056 WP_373930964.1 type IV secretion system protein Machinery gene
  QAD56_RS00725 (QAD56_00725) - 150199..150323 (+) 125 Protein_140 comB7 lipoprotein -
  QAD56_RS00730 (QAD56_00730) comB8 150320..151063 (+) 744 WP_373930967.1 type IV secretion system protein Machinery gene
  QAD56_RS00735 (QAD56_00735) comB9 151063..152025 (+) 963 WP_373930969.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  QAD56_RS00740 (QAD56_00740) comB10 152018..153154 (+) 1137 WP_373930970.1 DNA type IV secretion system protein ComB10 Machinery gene
  QAD56_RS00745 (QAD56_00745) - 153224..154636 (+) 1413 WP_373930971.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  QAD56_RS00750 (QAD56_00750) gmd 154665..155810 (+) 1146 WP_373930973.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28654.82 Da        Isoelectric Point: 8.9546

>NTDB_id=860755 QAD56_RS00730 WP_373930967.1 150320..151063(+) (comB8) [Helicobacter pylori strain BS08]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLTNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=860755 QAD56_RS00730 WP_373930967.1 150320..151063(+) (comB8) [Helicobacter pylori strain BS08]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCGGCTAAACTAACGAACGAAAACAAGTTGGTGTATGAAAAGCGTTATAAAATTGTGCTGAGTTATTTGTTTG
ACACCCCAGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972