Detailed information NTG0860745

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: QAP04_RS06940
• Genome accession: NZ_CP130623
• Coordinates: 1456041..1457018 (-)
• Length: 325 a.a.
• NCBI ID: WP_373961252.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS04
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1451041..1462018

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP04_RS06915	-	1451102..1451291 (+)	190	Protein_1343	anthranilate synthase component I	-
QAP04_RS06920 (QAP04_06890)	-	1451335..1452267 (-)	933	WP_373961248.1	GDP-L-fucose synthase family protein	-
QAP04_RS06925 (QAP04_06895)	gmd	1452260..1453405 (-)	1146	WP_373961249.1	GDP-mannose 4,6-dehydratase	-
QAP04_RS06930 (QAP04_06900)	-	1453435..1454847 (-)	1413	WP_373961250.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QAP04_RS06935 (QAP04_06905)	comB10	1454918..1456048 (-)	1131	WP_373961251.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP04_RS06940 (QAP04_06910)	comB9	1456041..1457018 (-)	978	WP_373961252.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAP04_RS06945 (QAP04_06915)	comB8	1457018..1457761 (-)	744	WP_033735961.1	virB8 family protein	Machinery gene
QAP04_RS06950 (QAP04_06920)	comB7	1457758..1457871 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
QAP04_RS06955 (QAP04_06925)	comB6	1457887..1458942 (-)	1056	WP_373961815.1	type IV secretion system protein	Machinery gene
QAP04_RS06960 (QAP04_06930)	-	1458950..1459945 (-)	996	WP_373961253.1	PDZ domain-containing protein	-
QAP04_RS06965 (QAP04_06935)	-	1459945..1460238 (-)	294	WP_000347921.1	YbaB/EbfC family nucleoid-associated protein	-
QAP04_RS06970 (QAP04_06940)	panD	1460241..1460594 (-)	354	WP_373961254.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37482.06 Da
• Isoelectric Point: 9.3370

>NTDB_id=860745 QAP04_RS06940 WP_373961252.1 1456041..1457018(-) (comB9) [Helicobacter pylori strain BS04]
MRKVLYALMGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIDDKN
YYSNAFMKPQNKENKENTFENAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGIC
SKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVK
KGKDE

Nucleotide

• Length: 978 bp

>NTDB_id=860745 QAP04_RS06940 WP_373961252.1 1456041..1457018(-) (comB9) [Helicobacter pylori strain BS04]
ATGCGTAAGGTTTTATACGCTCTCATGGGATTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCTATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGACAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGACGATAAAAAC
TATTACTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATAAAGAAAATACCTTTGAAAATGCCCCCACAAACAACAA
GCCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACTAACGCCATGA
AAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGT
TCTAAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAA
ATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCG
ATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGTATCCGTTTTGTCAAA
AAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	96.012	100	0.963