Detailed information NTG0860748

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: QAP04_RS06955
• Genome accession: NZ_CP130623
• Coordinates: 1457887..1458942 (-)
• Length: 351 a.a.
• NCBI ID: WP_373961815.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BS04
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1452887..1463942

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QAP04_RS06930 (QAP04_06900)	-	1453435..1454847 (-)	1413	WP_373961250.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
QAP04_RS06935 (QAP04_06905)	comB10	1454918..1456048 (-)	1131	WP_373961251.1	DNA type IV secretion system protein ComB10	Machinery gene
QAP04_RS06940 (QAP04_06910)	comB9	1456041..1457018 (-)	978	WP_373961252.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
QAP04_RS06945 (QAP04_06915)	comB8	1457018..1457761 (-)	744	WP_033735961.1	virB8 family protein	Machinery gene
QAP04_RS06950 (QAP04_06920)	comB7	1457758..1457871 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
QAP04_RS06955 (QAP04_06925)	comB6	1457887..1458942 (-)	1056	WP_373961815.1	type IV secretion system protein	Machinery gene
QAP04_RS06960 (QAP04_06930)	-	1458950..1459945 (-)	996	WP_373961253.1	PDZ domain-containing protein	-
QAP04_RS06965 (QAP04_06935)	-	1459945..1460238 (-)	294	WP_000347921.1	YbaB/EbfC family nucleoid-associated protein	-
QAP04_RS06970 (QAP04_06940)	panD	1460241..1460594 (-)	354	WP_373961254.1	aspartate 1-decarboxylase	-
QAP04_RS06975 (QAP04_06945)	-	1460584..1462809 (-)	2226	WP_373961255.1	AAA family ATPase	-
QAP04_RS06980 (QAP04_06950)	-	1462809..1463084 (-)	276	WP_181325190.1	ATP-dependent Clp protease adaptor ClpS	-
QAP04_RS06985 (QAP04_06955)	-	1463107..1463520 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39694.73 Da
• Isoelectric Point: 8.8165

>NTDB_id=860748 QAP04_RS06955 WP_373961815.1 1457887..1458942(-) (comB6) [Helicobacter pylori strain BS04]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSMVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKAWRSVVMACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSASMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=860748 QAP04_RS06955 WP_373961815.1 1457887..1458942(-) (comB6) [Helicobacter pylori strain BS04]
ATGAAAAATGACGCTTATGAGATCATTCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCATGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAACCATGGTTTTTACGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTATGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTACTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAGCCTGGAGGAGCGTTGTGATGGCATGCTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCGGTTACTAAGGCTTTAATAGACGCTCACATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTGCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972