Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   Q3Y59_RS16785 Genome accession   NZ_CP130608
Coordinates   3403389..3404078 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain XDY66     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3398389..3409078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y59_RS16750 (Q3Y59_16750) - 3398587..3399069 (-) 483 WP_003151394.1 flagellar protein FlgN -
  Q3Y59_RS16755 (Q3Y59_16755) flgM 3399084..3399350 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q3Y59_RS16760 (Q3Y59_16760) - 3399420..3399839 (-) 420 WP_069473598.1 TIGR03826 family flagellar region protein -
  Q3Y59_RS16765 (Q3Y59_16765) comFC 3399913..3400602 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  Q3Y59_RS16770 (Q3Y59_16770) - 3400608..3400892 (-) 285 WP_057080260.1 competence protein ComFB -
  Q3Y59_RS16775 (Q3Y59_16775) comFA 3400950..3402335 (-) 1386 WP_095318332.1 DEAD/DEAH box helicase Machinery gene
  Q3Y59_RS16780 (Q3Y59_16780) - 3402443..3403291 (-) 849 WP_058906396.1 DegV family protein -
  Q3Y59_RS16785 (Q3Y59_16785) degU 3403389..3404078 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  Q3Y59_RS16790 (Q3Y59_16790) degS 3404155..3405318 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  Q3Y59_RS16795 (Q3Y59_16795) - 3405541..3406188 (+) 648 WP_003151384.1 YigZ family protein -
  Q3Y59_RS16800 (Q3Y59_16800) - 3406193..3407407 (+) 1215 WP_003151383.1 LCP family protein -
  Q3Y59_RS16805 (Q3Y59_16805) - 3407497..3408573 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=860620 Q3Y59_RS16785 WP_003219701.1 3403389..3404078(-) (degU) [Bacillus velezensis strain XDY66]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=860620 Q3Y59_RS16785 WP_003219701.1 3403389..3404078(-) (degU) [Bacillus velezensis strain XDY66]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1