Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   Q3Y59_RS16775 Genome accession   NZ_CP130608
Coordinates   3400950..3402335 (-) Length   461 a.a.
NCBI ID   WP_095318332.1    Uniprot ID   -
Organism   Bacillus velezensis strain XDY66     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3395950..3407335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y59_RS16740 (Q3Y59_16740) flgL 3396125..3397042 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  Q3Y59_RS16745 (Q3Y59_16745) flgK 3397054..3398571 (-) 1518 WP_052586766.1 flagellar hook-associated protein FlgK -
  Q3Y59_RS16750 (Q3Y59_16750) - 3398587..3399069 (-) 483 WP_003151394.1 flagellar protein FlgN -
  Q3Y59_RS16755 (Q3Y59_16755) flgM 3399084..3399350 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  Q3Y59_RS16760 (Q3Y59_16760) - 3399420..3399839 (-) 420 WP_069473598.1 TIGR03826 family flagellar region protein -
  Q3Y59_RS16765 (Q3Y59_16765) comFC 3399913..3400602 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  Q3Y59_RS16770 (Q3Y59_16770) - 3400608..3400892 (-) 285 WP_057080260.1 competence protein ComFB -
  Q3Y59_RS16775 (Q3Y59_16775) comFA 3400950..3402335 (-) 1386 WP_095318332.1 DEAD/DEAH box helicase Machinery gene
  Q3Y59_RS16780 (Q3Y59_16780) - 3402443..3403291 (-) 849 WP_058906396.1 DegV family protein -
  Q3Y59_RS16785 (Q3Y59_16785) degU 3403389..3404078 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  Q3Y59_RS16790 (Q3Y59_16790) degS 3404155..3405318 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  Q3Y59_RS16795 (Q3Y59_16795) - 3405541..3406188 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52472.88 Da        Isoelectric Point: 10.1928

>NTDB_id=860619 Q3Y59_RS16775 WP_095318332.1 3400950..3402335(-) (comFA) [Bacillus velezensis strain XDY66]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWGPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALIYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=860619 Q3Y59_RS16775 WP_095318332.1 3400950..3402335(-) (comFA) [Bacillus velezensis strain XDY66]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGGGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTATTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTGCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627