Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   Q3Y59_RS11900 Genome accession   NZ_CP130608
Coordinates   2467643..2467978 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain XDY66     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2462643..2472978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q3Y59_RS11880 (Q3Y59_11880) gcvT 2463253..2464353 (-) 1101 WP_303302216.1 glycine cleavage system aminomethyltransferase GcvT -
  Q3Y59_RS11885 (Q3Y59_11885) - 2464777..2466447 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  Q3Y59_RS11890 (Q3Y59_11890) - 2466465..2467259 (+) 795 WP_003153106.1 YqhG family protein -
  Q3Y59_RS11895 (Q3Y59_11895) sinI 2467436..2467609 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  Q3Y59_RS11900 (Q3Y59_11900) sinR 2467643..2467978 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  Q3Y59_RS11905 (Q3Y59_11905) tasA 2468026..2468811 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  Q3Y59_RS11910 (Q3Y59_11910) sipW 2468875..2469459 (-) 585 WP_003153100.1 signal peptidase I SipW -
  Q3Y59_RS11915 (Q3Y59_11915) tapA 2469431..2470102 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  Q3Y59_RS11920 (Q3Y59_11920) - 2470361..2470690 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  Q3Y59_RS11925 (Q3Y59_11925) - 2470730..2470909 (-) 180 WP_003153093.1 YqzE family protein -
  Q3Y59_RS11930 (Q3Y59_11930) comGG 2470966..2471343 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  Q3Y59_RS11935 (Q3Y59_11935) comGF 2471344..2471739 (-) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  Q3Y59_RS11940 (Q3Y59_11940) comGE 2471753..2472067 (-) 315 WP_003153089.1 competence type IV pilus minor pilin ComGE -
  Q3Y59_RS11945 (Q3Y59_11945) comGD 2472051..2472488 (-) 438 WP_043867285.1 competence type IV pilus minor pilin ComGD Machinery gene
  Q3Y59_RS11950 (Q3Y59_11950) comGC 2472478..2472786 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=860594 Q3Y59_RS11900 WP_003153104.1 2467643..2467978(+) (sinR) [Bacillus velezensis strain XDY66]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=860594 Q3Y59_RS11900 WP_003153104.1 2467643..2467978(+) (sinR) [Bacillus velezensis strain XDY66]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991